OpenCPU wrapper: import config from CSV and convert to JSON
Source:R/opencpu.R
opencpu_config_read.RdOpenCPU wrapper: import config from CSV and convert to JSON
Usage
opencpu_config_read(
confDir = system.file("extdata/configs/dummy", package = "kwb.qmra")
)Arguments
- confDir
directory to read configuration files (Default: system.file('extdata/configs/dummy', package = 'kwb.qmra')")
Examples
### Example json config file
config_json <- kwb.qmra::opencpu_config_read()
#> Rows: 3 Columns: 10
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr (2): name, type
#> dbl (5): value, min, max, mode, mean
#> lgl (3): sd, meanlog, sdlog
#>
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
#> Rows: 37 Columns: 13
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr (3): PathogenName, PathogenGroup, type
#> dbl (4): PathogenID, simulate, min, max
#> lgl (6): value, mode, mean, sd, meanlog, sdlog
#>
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
#> Rows: 38 Columns: 13
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr (4): TreatmentName, TreatmentGroup, PathogenGroup, type
#> dbl (3): TreatmentID, min, max
#> lgl (6): value, mode, mean, sd, meanlog, sdlog
#>
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
#> Rows: 5 Columns: 4
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr (2): TreatmentSchemeName, TreatmentName
#> dbl (2): TreatmentSchemeID, TreatmentID
#>
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
#> Rows: 37 Columns: 13
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr (9): PathogenName, PathogenGroup, Best fit model*, Host type, Dose units...
#> dbl (4): PathogenID, k, alpha, N50
#>
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
#> Rows: 37 Columns: 4
#> ── Column specification ────────────────────────────────────────────────────────
#> Delimiter: ","
#> chr (1): PathogenName
#> dbl (3): PathogenID, infection_to_illness, dalys_per_case
#>
#> ℹ Use `spec()` to retrieve the full column specification for this data.
#> ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.
head(config_json)
#> [1] "{\n \"exposure\": [\n {\n \"name\": \"number_of_repeatings\",\n \"type\": \"value\",\n \"value\": 10\n },\n {\n \"name\": \"number_of_exposures\",\n \"type\": \"value\",\n \"value\": 365\n },\n {\n \"name\": \"volume_perEvent\",\n \"type\": \"triangle\",\n \"min\": 0.5,\n \"max\": 3,\n \"mode\": 1.5,\n \"mean\": 2\n }\n ],\n \"inflow\": [\n {\n \"PathogenID\": 1,\n \"PathogenName\": \"Bacillus anthracis\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 2,\n \"PathogenName\": \"Burkholderia pseudomallei\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 3,\n \"PathogenName\": \"Campylobacter jejuni and Campylobacter coli\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 1,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 4,\n \"PathogenName\": \"Coxiella burnetii\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 5,\n \"PathogenName\": \"Escherichia coli enterohemorrhagic (EHEC)\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 6,\n \"PathogenName\": \"Escherichia coli\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 7,\n \"PathogenName\": \"Francisella tularensis\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 8,\n \"PathogenName\": \"Legionella pneumophila\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 9,\n \"PathogenName\": \"Listeria monocytogenes (Death as response)\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 10,\n \"PathogenName\": \"Listeria monocytogenes (Infection)\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 11,\n \"PathogenName\": \"Listeria monocytogenes (Stillbirths)\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 12,\n \"PathogenName\": \"Mycobacterium avium\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 13,\n \"PathogenName\": \"Pseudomonas aeruginosa (Contact lens)\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 14,\n \"PathogenName\": \"Pseudomonas aeruginosa (bacterimia)\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 15,\n \"PathogenName\": \"Rickettsia rickettsi\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 16,\n \"PathogenName\": \"Salmonella Typhi\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 17,\n \"PathogenName\": \"Salmonella anatum\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 18,\n \"PathogenName\": \"Salmonella meleagridis\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 19,\n \"PathogenName\": \"Salmonella nontyphoid\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 20,\n \"PathogenName\": \"Salmonella serotype newport\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 21,\n \"PathogenName\": \"Shigella\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 22,\n \"PathogenName\": \"Staphylococcus aureus\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 23,\n \"PathogenName\": \"Vibrio cholerae\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 24,\n \"PathogenName\": \"Yersinia pestis\",\n \"PathogenGroup\": \"Bacteria\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 25,\n \"PathogenName\": \"Adenovirus\",\n \"PathogenGroup\": \"Viruses\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 26,\n \"PathogenName\": \"Echovirus\",\n \"PathogenGroup\": \"Viruses\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 27,\n \"PathogenName\": \"Enteroviruses\",\n \"PathogenGroup\": \"Viruses\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 28,\n \"PathogenName\": \"Influenza\",\n \"PathogenGroup\": \"Viruses\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 29,\n \"PathogenName\": \"Lassa virus\",\n \"PathogenGroup\": \"Viruses\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 30,\n \"PathogenName\": \"Poliovirus\",\n \"PathogenGroup\": \"Viruses\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 31,\n \"PathogenName\": \"Rhinovirus\",\n \"PathogenGroup\": \"Viruses\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 32,\n \"PathogenName\": \"Rotavirus\",\n \"PathogenGroup\": \"Viruses\",\n \"simulate\": 1,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 33,\n \"PathogenName\": \"SARS\",\n \"PathogenGroup\": \"Viruses\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 34,\n \"PathogenName\": \"Cryptosporidium parvum and Cryptosporidium hominis\",\n \"PathogenGroup\": \"Protozoa\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 35,\n \"PathogenName\": \"Endamoeba coli\",\n \"PathogenGroup\": \"Protozoa\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 36,\n \"PathogenName\": \"Giardia duodenalis\",\n \"PathogenGroup\": \"Protozoa\",\n \"simulate\": 1,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n },\n {\n \"PathogenID\": 37,\n \"PathogenName\": \"Naegleria fowleri\",\n \"PathogenGroup\": \"Protozoa\",\n \"simulate\": 0,\n \"type\": \"uniform\",\n \"min\": 10,\n \"max\": 10000\n }\n ],\n \"treatment\": {\n \"processes\": [\n {\n \"TreatmentID\": 1,\n \"TreatmentName\": \"Conventional clarification\",\n \"TreatmentGroup\": \"Coagulation, flocculation and sedimentation\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 0.2,\n \"max\": 2\n },\n {\n \"TreatmentID\": 1,\n \"TreatmentName\": \"Conventional clarification\",\n \"TreatmentGroup\": \"Coagulation, flocculation and sedimentation\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 1,\n \"max\": 2\n },\n {\n \"TreatmentID\": 1,\n \"TreatmentName\": \"Conventional clarification\",\n \"TreatmentGroup\": \"Coagulation, flocculation and sedimentation\",\n \"PathogenGroup\": \"Viruses\",\n \"type\": \"uniform\",\n \"min\": 0.1,\n \"max\": 3.4\n },\n {\n \"TreatmentID\": 2,\n \"TreatmentName\": \"Dissolved air flotation\",\n \"TreatmentGroup\": \"Coagulation, flocculation and sedimentation\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 0.6,\n \"max\": 2.6\n },\n {\n \"TreatmentID\": 3,\n \"TreatmentName\": \"High-rate clarification\",\n \"TreatmentGroup\": \"Coagulation, flocculation and sedimentation\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 2.8\n },\n {\n \"TreatmentID\": 4,\n \"TreatmentName\": \"Lime softening\",\n \"TreatmentGroup\": \"Coagulation, flocculation and sedimentation\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 1,\n \"max\": 4\n },\n {\n \"TreatmentID\": 4,\n \"TreatmentName\": \"Lime softening\",\n \"TreatmentGroup\": \"Coagulation, flocculation and sedimentation\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 0,\n \"max\": 2\n },\n {\n \"TreatmentID\": 4,\n \"TreatmentName\": \"Lime softening\",\n \"TreatmentGroup\": \"Coagulation, flocculation and sedimentation\",\n \"PathogenGroup\": \"Viruses\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 4\n },\n {\n \"TreatmentID\": 5,\n \"TreatmentName\": \"Granular high-rate filtration\",\n \"TreatmentGroup\": \"Filtration\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 0.2,\n \"max\": 4.4\n },\n {\n \"TreatmentID\": 5,\n \"TreatmentName\": \"Granular high-rate filtration\",\n \"TreatmentGroup\": \"Filtration\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 0.4,\n \"max\": 3.3\n },\n {\n \"TreatmentID\": 5,\n \"TreatmentName\": \"Granular high-rate filtration\",\n \"TreatmentGroup\": \"Filtration\",\n \"PathogenGroup\": \"Viruses\",\n \"type\": \"uniform\",\n \"min\": 0,\n \"max\": 3.5\n },\n {\n \"TreatmentID\": 6,\n \"TreatmentName\": \"Membrane filtration (micro, ultra-, nanofiltration, reverse osmosis)\",\n \"TreatmentGroup\": \"Filtration\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 1,\n \"max\": 7\n },\n {\n \"TreatmentID\": 6,\n \"TreatmentName\": \"Membrane filtration (micro, ultra-, nanofiltration, reverse osmosis)\",\n \"TreatmentGroup\": \"Filtration\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 2.3,\n \"max\": 7\n },\n {\n \"TreatmentID\": 6,\n \"TreatmentName\": \"Membrane filtration (micro, ultra-, nanofiltration, reverse osmosis)\",\n \"TreatmentGroup\": \"Filtration\",\n \"PathogenGroup\": \"Viruses\",\n \"type\": \"uniform\",\n \"min\": 1,\n \"max\": 6.5\n },\n {\n \"TreatmentID\": 7,\n \"TreatmentName\": \"Precoat filtration\",\n \"TreatmentGroup\": \"Filtration\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 0.2,\n \"max\": 2.3\n },\n {\n \"TreatmentID\": 7,\n \"TreatmentName\": \"Precoat filtration\",\n \"TreatmentGroup\": \"Filtration\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 3,\n \"max\": 6.7\n },\n {\n \"TreatmentID\": 7,\n \"TreatmentName\": \"Precoat filtration\",\n \"TreatmentGroup\": \"Filtration\",\n \"PathogenGroup\": \"Viruses\",\n \"type\": \"uniform\",\n \"min\": 1,\n \"max\": 1.7\n },\n {\n \"TreatmentID\": 8,\n \"TreatmentName\": \"Slow sand filtration\",\n \"TreatmentGroup\": \"Filtration\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 6\n },\n {\n \"TreatmentID\": 8,\n \"TreatmentName\": \"Slow sand filtration\",\n \"TreatmentGroup\": \"Filtration\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 0.3,\n \"max\": 5\n },\n {\n \"TreatmentID\": 8,\n \"TreatmentName\": \"Slow sand filtration\",\n \"TreatmentGroup\": \"Filtration\",\n \"PathogenGroup\": \"Viruses\",\n \"type\": \"uniform\",\n \"min\": 0.25,\n \"max\": 4\n },\n {\n \"TreatmentID\": 9,\n \"TreatmentName\": \"Bank filtration\",\n \"TreatmentGroup\": \"Pretreatment\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 6\n },\n {\n \"TreatmentID\": 9,\n \"TreatmentName\": \"Bank filtration\",\n \"TreatmentGroup\": \"Pretreatment\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 1,\n \"max\": 2\n },\n {\n \"TreatmentID\": 9,\n \"TreatmentName\": \"Bank filtration\",\n \"TreatmentGroup\": \"Pretreatment\",\n \"PathogenGroup\": \"Viruses\",\n \"type\": \"uniform\",\n \"min\": 2.1,\n \"max\": 8.3\n },\n {\n \"TreatmentID\": 10,\n \"TreatmentName\": \"Roughing filters\",\n \"TreatmentGroup\": \"Pretreatment\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 0.2,\n \"max\": 2.3\n },\n {\n \"TreatmentID\": 11,\n \"TreatmentName\": \"Storage reservoirs\",\n \"TreatmentGroup\": \"Pretreatment\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 0.7,\n \"max\": 2.2\n },\n {\n \"TreatmentID\": 11,\n \"TreatmentName\": \"Storage reservoirs\",\n \"TreatmentGroup\": \"Pretreatment\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 1.4,\n \"max\": 2.3\n },\n {\n \"TreatmentID\": 12,\n \"TreatmentName\": \"Chlorine\",\n \"TreatmentGroup\": \"Primary disinfection\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 2\n },\n {\n \"TreatmentID\": 12,\n \"TreatmentName\": \"Chlorine\",\n \"TreatmentGroup\": \"Primary disinfection\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 2\n },\n {\n \"TreatmentID\": 12,\n \"TreatmentName\": \"Chlorine\",\n \"TreatmentGroup\": \"Primary disinfection\",\n \"PathogenGroup\": \"Viruses\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 2\n },\n {\n \"TreatmentID\": 13,\n \"TreatmentName\": \"Chlorine dioxide\",\n \"TreatmentGroup\": \"Primary disinfection\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 2\n },\n {\n \"TreatmentID\": 13,\n \"TreatmentName\": \"Chlorine dioxide\",\n \"TreatmentGroup\": \"Primary disinfection\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 2\n },\n {\n \"TreatmentID\": 13,\n \"TreatmentName\": \"Chlorine dioxide\",\n \"TreatmentGroup\": \"Primary disinfection\",\n \"PathogenGroup\": \"Viruses\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 2\n },\n {\n \"TreatmentID\": 14,\n \"TreatmentName\": \"Ozone\",\n \"TreatmentGroup\": \"Primary disinfection\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 2\n },\n {\n \"TreatmentID\": 14,\n \"TreatmentName\": \"Ozone\",\n \"TreatmentGroup\": \"Primary disinfection\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 2\n },\n {\n \"TreatmentID\": 14,\n \"TreatmentName\": \"Ozone\",\n \"TreatmentGroup\": \"Primary disinfection\",\n \"PathogenGroup\": \"Viruses\",\n \"type\": \"uniform\",\n \"min\": 2,\n \"max\": 2\n },\n {\n \"TreatmentID\": 15,\n \"TreatmentName\": \"UV\",\n \"TreatmentGroup\": \"Primary disinfection\",\n \"PathogenGroup\": \"Bacteria\",\n \"type\": \"uniform\",\n \"min\": 4,\n \"max\": 4\n },\n {\n \"TreatmentID\": 15,\n \"TreatmentName\": \"UV\",\n \"TreatmentGroup\": \"Primary disinfection\",\n \"PathogenGroup\": \"Protozoa\",\n \"type\": \"uniform\",\n \"min\": 4,\n \"max\": 4\n },\n {\n \"TreatmentID\": 15,\n \"TreatmentName\": \"UV\",\n \"TreatmentGroup\": \"Primary disinfection\",\n \"PathogenGroup\": \"Viruses\",\n \"type\": \"uniform\",\n \"min\": 4,\n \"max\": 4\n }\n ],\n \"schemes\": [\n {\n \"TreatmentSchemeID\": 1,\n \"TreatmentSchemeName\": \"Berlin (BF + Slow sand)\",\n \"TreatmentID\": 8,\n \"TreatmentName\": \"Slow sand filtration\"\n },\n {\n \"TreatmentSchemeID\": 1,\n \"TreatmentSchemeName\": \"Berlin (BF + Slow sand)\",\n \"TreatmentID\": 9,\n \"TreatmentName\": \"Bank filtration\"\n },\n {\n \"TreatmentSchemeID\": 2,\n \"TreatmentSchemeName\": \"Depth & surface filtration\",\n \"TreatmentID\": 1,\n \"TreatmentName\": \"Conventional clarification\"\n },\n {\n \"TreatmentSchemeID\": 2,\n \"TreatmentSchemeName\": \"Depth & surface filtration\",\n \"TreatmentID\": 5,\n \"TreatmentName\": \"Granular high-rate filtration\"\n },\n {\n \"TreatmentSchemeID\": 2,\n \"TreatmentSchemeName\": \"Depth & surface filtration\",\n \"TreatmentID\": 15,\n \"TreatmentName\": \"UV\"\n }\n ]\n },\n \"doseresponse\": [\n {\n \"PathogenID\": 1,\n \"PathogenName\": \"Bacillus anthracis\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0,\n \"Host type\": \"guinea pig\",\n \"Dose units\": \"spores\",\n \"Route\": \"inhalation\",\n \"Response\": \"death\",\n \"Reference\": \"Druett 1953\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Bacillus_anthracis:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 2,\n \"PathogenName\": \"Burkholderia pseudomallei\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.328,\n \"N50\": 5430,\n \"Host type\": \"C57BL/6 mice and diabetic rat\",\n \"Dose units\": \"CFU\",\n \"Route\": \"intranasal,intraperitoneal\",\n \"Response\": \"death\",\n \"Reference\": \"Liu, Koo et al. 2002 and Brett and Woods 1996\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Burkholderia_pseudomallei:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 3,\n \"PathogenName\": \"Campylobacter jejuni and Campylobacter coli\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.144,\n \"N50\": 890,\n \"Host type\": \"human\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral (in milk)\",\n \"Response\": \"infection\",\n \"Reference\": \"Black et al 1988\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Campylobacter_jejuni_and_Campylobacter_coli:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 4,\n \"PathogenName\": \"Coxiella burnetii\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.357,\n \"N50\": 493000000,\n \"Host type\": \"C57BL/1OScN mice\",\n \"Dose units\": \"PFU\",\n \"Route\": \"intraperitoneal\",\n \"Response\": \"death\",\n \"Reference\": \"Williams et al, 1982\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Coxiella_burnetii:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 5,\n \"PathogenName\": \"Escherichia coli enterohemorrhagic (EHEC)\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0.0002,\n \"Host type\": \"pig\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral (in food)\",\n \"Response\": \"shedding in feces\",\n \"Reference\": \"Cornick & Helgerson (2004)\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Escherichia_coli_enterohemorrhagic_(EHEC):_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 6,\n \"PathogenName\": \"Escherichia coli\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.155,\n \"N50\": 2110000,\n \"Host type\": \"human\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral (in milk)\",\n \"Response\": \"positive stool isolation\",\n \"Reference\": \"DuPont et al. (1971)\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Escherichia_coli:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 7,\n \"PathogenName\": \"Francisella tularensis\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0.0473,\n \"Host type\": \"monkeys\",\n \"Dose units\": \"CFU\",\n \"Route\": \"inhalation\",\n \"Response\": \"death\",\n \"Reference\": \"Day and Berendt, 1972\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Francisella_tularensis:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 8,\n \"PathogenName\": \"Legionella pneumophila\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0.0599,\n \"Host type\": \"guinea pig\",\n \"Dose units\": \"CFU\",\n \"Route\": \"inhalation\",\n \"Response\": \"infection\",\n \"Reference\": \"Muller et al. (1983)\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Legionella_pneumophila:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 9,\n \"PathogenName\": \"Listeria monocytogenes (Death as response)\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0,\n \"Host type\": \"C57B1/6J mice\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral\",\n \"Response\": \"death\",\n \"Reference\": \"Golnazarian, Donnelly et al. 1989\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Listeria_monocytogenes_(Death_as_response):_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 10,\n \"PathogenName\": \"Listeria monocytogenes (Infection)\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.253,\n \"N50\": 277,\n \"Host type\": \"C57Bl/6J mice\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral\",\n \"Response\": \"infection\",\n \"Reference\": \"Golnazarian\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Listeria_monocytogenes_(Infection):_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 11,\n \"PathogenName\": \"Listeria monocytogenes (Stillbirths)\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.0422,\n \"N50\": 1780000000,\n \"Host type\": \"pooled\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral\",\n \"Response\": \"stillbirths\",\n \"Reference\": \"Smith, Williams2007\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Listeria_monocytogenes_(Stillbirths):_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 12,\n \"PathogenName\": \"Mycobacterium avium\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0.0007,\n \"Host type\": \"deer\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral\",\n \"Response\": \"infection\",\n \"Reference\": \"O'Brien et al(1976)\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Mycobacterium_avium:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 13,\n \"PathogenName\": \"Pseudomonas aeruginosa (Contact lens)\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.19,\n \"N50\": 18500,\n \"Host type\": \"white rabbit\",\n \"Dose units\": \"CFU\",\n \"Route\": \"contact lens\",\n \"Response\": \"corneal ulceration\",\n \"Reference\": \"Lawin-Brussel et al. (1993)\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Pseudomonas_aeruginosa_(Contact_lens):_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 14,\n \"PathogenName\": \"Pseudomonas aeruginosa (bacterimia)\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0.0001,\n \"Host type\": \"Swiss webster mice (5day old)\",\n \"Dose units\": \"CFU\",\n \"Route\": \"injected in eyelids\",\n \"Response\": \"death\",\n \"Reference\": \"Hazlett, Rosen et al. 1978\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Pseudomonas_aeruginosa_(bacterimia):_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 15,\n \"PathogenName\": \"Rickettsia rickettsi\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.777,\n \"N50\": 21.3,\n \"Host type\": \"Pooled data\",\n \"Dose units\": \"CFU\",\n \"Response\": \"morbidity\",\n \"Reference\": \"Saslaw and Carlisle 1966 and Dupont, Hornick et al. 1973\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Rickettsia_rickettsi:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 16,\n \"PathogenName\": \"Salmonella Typhi\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.175,\n \"N50\": 1110000,\n \"Host type\": \"human\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral, in milk\",\n \"Response\": \"disease\",\n \"Reference\": \"Hornick et al. (1966),Hornick et al. (1970)\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Salmonella_Typhi:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 17,\n \"PathogenName\": \"Salmonella anatum\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.318,\n \"N50\": 37100,\n \"Host type\": \"human\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral, with eggnog\",\n \"Response\": \"positive stool culture\",\n \"Reference\": \"McCullough and Elsele,1951\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Salmonella_anatum:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 18,\n \"PathogenName\": \"Salmonella meleagridis\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.389,\n \"N50\": 16800,\n \"Host type\": \"human\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral, with eggnog\",\n \"Response\": \"infection\",\n \"Reference\": \"McCullough and Eisele 1951,2\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Salmonella_meleagridis:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 19,\n \"PathogenName\": \"Salmonella nontyphoid\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.21,\n \"N50\": 49.8,\n \"Host type\": \"mice\",\n \"Dose units\": \"CFU\",\n \"Route\": \"intraperitoneal\",\n \"Response\": \"death\",\n \"Reference\": \"Meynell and Meynell,1958\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Salmonella_nontyphoid:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 20,\n \"PathogenName\": \"Salmonella serotype newport\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"exponential\",\n \"k\": 3.97e-06,\n \"Host type\": \"human\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral\",\n \"Response\": \"infection\",\n \"Reference\": \"McCullough and Elsele,1951\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Salmonella_serotype_newport:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 21,\n \"PathogenName\": \"Shigella\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.265,\n \"N50\": 1480,\n \"Host type\": \"human\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral (in milk)\",\n \"Response\": \"positive stool isolation\",\n \"Reference\": \"DuPont et al. (1972b)\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Shigella:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 22,\n \"PathogenName\": \"Staphylococcus aureus\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"exponential\",\n \"k\": 7.64e-08,\n \"Host type\": \"human\",\n \"Dose units\": \"CFU/cm2\",\n \"Route\": \"subcutaneous\",\n \"Response\": \"infection\",\n \"Reference\": \"Rose and Haas 1999\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Staphylococcus_aureus:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 23,\n \"PathogenName\": \"Vibrio cholerae\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.25,\n \"N50\": 243,\n \"Host type\": \"human\",\n \"Dose units\": \"CFU\",\n \"Route\": \"oral (with NaHCO3)\",\n \"Response\": \"infection\",\n \"Reference\": \"Hornick et al., (1971)\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Vibrio_cholerae:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 24,\n \"PathogenName\": \"Yersinia pestis\",\n \"PathogenGroup\": \"Bacteria\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0.0016,\n \"Host type\": \"mice\",\n \"Dose units\": \"CFU\",\n \"Route\": \"intranasal\",\n \"Response\": \"death\",\n \"Reference\": \"Lathem et al. 2005\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Yersinia_pestis:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 25,\n \"PathogenName\": \"Adenovirus\",\n \"PathogenGroup\": \"Viruses\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0.607,\n \"Host type\": \"human\",\n \"Dose units\": \"TCID50\",\n \"Route\": \"inhalation\",\n \"Response\": \"infection\",\n \"Reference\": \"Couch, Cate et al. 1966\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Adenovirus:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 26,\n \"PathogenName\": \"Echovirus\",\n \"PathogenGroup\": \"Viruses\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 1.06,\n \"N50\": 922,\n \"Host type\": \"human\",\n \"Dose units\": \"PFU\",\n \"Route\": \"oral\",\n \"Response\": \"infection\",\n \"Reference\": \"Schiff et al.,1984\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Echovirus:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 27,\n \"PathogenName\": \"Enteroviruses\",\n \"PathogenGroup\": \"Viruses\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0.0037,\n \"Host type\": \"pig\",\n \"Dose units\": \"PFU\",\n \"Route\": \"oral\",\n \"Response\": \"infection\",\n \"Reference\": \"Cliver, 1981\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Enteroviruses:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 28,\n \"PathogenName\": \"Influenza\",\n \"PathogenGroup\": \"Viruses\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.581,\n \"N50\": 945000,\n \"Host type\": \"human\",\n \"Dose units\": \"TCID50\",\n \"Route\": \"intranasal\",\n \"Response\": \"infection\",\n \"Reference\": \"Murphy et al., 1984 & Murphy et al., 1985\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Influenza:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 29,\n \"PathogenName\": \"Lassa virus\",\n \"PathogenGroup\": \"Viruses\",\n \"Best fit model*\": \"exponential\",\n \"k\": 2.95,\n \"Host type\": \"guinea pig\",\n \"Dose units\": \"PFU\",\n \"Route\": \"subcutaneous\",\n \"Response\": \"death\",\n \"Reference\": \"Jahrling et al., 1982\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Lassa_virus:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 30,\n \"PathogenName\": \"Poliovirus\",\n \"PathogenGroup\": \"Viruses\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0.491,\n \"Host type\": \"human\",\n \"Dose units\": \"PD50 (mouse paralytic doses)\",\n \"Route\": \"oral (capsule)\",\n \"Response\": \"alimentary infection\",\n \"Reference\": \"Koprowski\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Poliovirus:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 31,\n \"PathogenName\": \"Rhinovirus\",\n \"PathogenGroup\": \"Viruses\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.221,\n \"N50\": 1.81,\n \"Host type\": \"human\",\n \"Dose units\": \"TCID50 doses\",\n \"Route\": \"intranasal\",\n \"Response\": \"infection\",\n \"Reference\": \"Hendley et al., 1972\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Rhinovirus:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 32,\n \"PathogenName\": \"Rotavirus\",\n \"PathogenGroup\": \"Viruses\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.253,\n \"N50\": 6.17,\n \"Host type\": \"human\",\n \"Dose units\": \"FFU\",\n \"Route\": \"oral\",\n \"Response\": \"infection\",\n \"Reference\": \"Ward et al, 1986\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Rotavirus:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 33,\n \"PathogenName\": \"SARS\",\n \"PathogenGroup\": \"Viruses\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0.0025,\n \"Host type\": \"mice hACE-2 and A/J\",\n \"Dose units\": \"PFU\",\n \"Route\": \"intranasal\",\n \"Response\": \"death\",\n \"Reference\": \"DeDiego et al., 2008 & De Albuquerque et al., 2006\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/SARS:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 34,\n \"PathogenName\": \"Cryptosporidium parvum and Cryptosporidium hominis\",\n \"PathogenGroup\": \"Protozoa\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0.0572,\n \"Host type\": \"human\",\n \"Dose units\": \"oocysts\",\n \"Route\": \"oral\",\n \"Response\": \"infection\",\n \"Reference\": \"Messner et al. 2001\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Cryptosporidium_parvum_and_Cryptosporidium_hominis:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 35,\n \"PathogenName\": \"Endamoeba coli\",\n \"PathogenGroup\": \"Protozoa\",\n \"Best fit model*\": \"beta-Poisson\",\n \"alpha\": 0.101,\n \"N50\": 341,\n \"Host type\": \"human\",\n \"Dose units\": \"Cysts\",\n \"Route\": \"oral\",\n \"Response\": \"infection\",\n \"Reference\": \"Rendtorff 1954\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Endamoeba_coli:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 36,\n \"PathogenName\": \"Giardia duodenalis\",\n \"PathogenGroup\": \"Protozoa\",\n \"Best fit model*\": \"exponential\",\n \"k\": 0.0199,\n \"Host type\": \"human\",\n \"Dose units\": \"Cysts\",\n \"Route\": \"oral\",\n \"Response\": \"infection\",\n \"Reference\": \"Rendtorff 1954\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Giardia_duodenalis:_Dose_Response_Models\"\n },\n {\n \"PathogenID\": 37,\n \"PathogenName\": \"Naegleria fowleri\",\n \"PathogenGroup\": \"Protozoa\",\n \"Best fit model*\": \"exponential\",\n \"k\": 3.42e-07,\n \"Host type\": \"mice\",\n \"Dose units\": \"no of trophozoites\",\n \"Route\": \"intravenous\",\n \"Response\": \"death\",\n \"Reference\": \"Adams et al. 1976 & Haggerty and John 1978\",\n \"Link\": \"http://qmrawiki.canr.msu.edu/index.php/Naegleria_fowleri:_Dose_Response_Models\"\n }\n ],\n \"health\": [\n {\n \"PathogenID\": 1,\n \"PathogenName\": \"Bacillus anthracis\"\n },\n {\n \"PathogenID\": 2,\n \"PathogenName\": \"Burkholderia pseudomallei\"\n },\n {\n \"PathogenID\": 3,\n \"PathogenName\": \"Campylobacter jejuni and Campylobacter coli\",\n \"infection_to_illness\": 0.7,\n \"dalys_per_case\": 0.0046\n },\n {\n \"PathogenID\": 4,\n \"PathogenName\": \"Coxiella burnetii\"\n },\n {\n \"PathogenID\": 5,\n \"PathogenName\": \"Escherichia coli enterohemorrhagic (EHEC)\"\n },\n {\n \"PathogenID\": 6,\n \"PathogenName\": \"Escherichia coli\"\n },\n {\n \"PathogenID\": 7,\n \"PathogenName\": \"Francisella tularensis\"\n },\n {\n \"PathogenID\": 8,\n \"PathogenName\": \"Legionella pneumophila\"\n },\n {\n \"PathogenID\": 9,\n \"PathogenName\": \"Listeria monocytogenes (Death as response)\"\n },\n {\n \"PathogenID\": 10,\n \"PathogenName\": \"Listeria monocytogenes (Infection)\"\n },\n {\n \"PathogenID\": 11,\n \"PathogenName\": \"Listeria monocytogenes (Stillbirths)\"\n },\n {\n \"PathogenID\": 12,\n \"PathogenName\": \"Mycobacterium avium\"\n },\n {\n \"PathogenID\": 13,\n \"PathogenName\": \"Pseudomonas aeruginosa (Contact lens)\"\n },\n {\n \"PathogenID\": 14,\n \"PathogenName\": \"Pseudomonas aeruginosa (bacterimia)\"\n },\n {\n \"PathogenID\": 15,\n \"PathogenName\": \"Rickettsia rickettsi\"\n },\n {\n \"PathogenID\": 16,\n \"PathogenName\": \"Salmonella Typhi\"\n },\n {\n \"PathogenID\": 17,\n \"PathogenName\": \"Salmonella anatum\"\n },\n {\n \"PathogenID\": 18,\n \"PathogenName\": \"Salmonella meleagridis\"\n },\n {\n \"PathogenID\": 19,\n \"PathogenName\": \"Salmonella nontyphoid\"\n },\n {\n \"PathogenID\": 20,\n \"PathogenName\": \"Salmonella serotype newport\"\n },\n {\n \"PathogenID\": 21,\n \"PathogenName\": \"Shigella\"\n },\n {\n \"PathogenID\": 22,\n \"PathogenName\": \"Staphylococcus aureus\"\n },\n {\n \"PathogenID\": 23,\n \"PathogenName\": \"Vibrio cholerae\"\n },\n {\n \"PathogenID\": 24,\n \"PathogenName\": \"Yersinia pestis\"\n },\n {\n \"PathogenID\": 25,\n \"PathogenName\": \"Adenovirus\"\n },\n {\n \"PathogenID\": 26,\n \"PathogenName\": \"Echovirus\"\n },\n {\n \"PathogenID\": 27,\n \"PathogenName\": \"Enteroviruses\"\n },\n {\n \"PathogenID\": 28,\n \"PathogenName\": \"Influenza\"\n },\n {\n \"PathogenID\": 29,\n \"PathogenName\": \"Lassa virus\"\n },\n {\n \"PathogenID\": 30,\n \"PathogenName\": \"Poliovirus\"\n },\n {\n \"PathogenID\": 31,\n \"PathogenName\": \"Rhinovirus\"\n },\n {\n \"PathogenID\": 32,\n \"PathogenName\": \"Rotavirus\",\n \"infection_to_illness\": 0.03,\n \"dalys_per_case\": 0.014\n },\n {\n \"PathogenID\": 33,\n \"PathogenName\": \"SARS\"\n },\n {\n \"PathogenID\": 34,\n \"PathogenName\": \"Cryptosporidium parvum and Cryptosporidium hominis\"\n },\n {\n \"PathogenID\": 35,\n \"PathogenName\": \"Endamoeba coli\"\n },\n {\n \"PathogenID\": 36,\n \"PathogenName\": \"Giardia duodenalis\",\n \"infection_to_illness\": 0.3,\n \"dalys_per_case\": 0.0015\n },\n {\n \"PathogenID\": 37,\n \"PathogenName\": \"Naegleria fowleri\"\n }\n ]\n}"