config_default_json: default configuration developed by Christoph Sprenger for kwb.qmra::opencpu_simulate_risk() in JSON format
Source:R/datasets.R
config_dummy_json.RdJSON input configuration generated with R script (data-raw/config_json.R)
Usage
data(config_default_json)Format
A json list with all configuration parameters used by opencpu_simulate_risk, which are passed to simulate_risk
Examples
data("config_default_json")
config_default_json
#> {
#> "exposure": [
#> {
#> "name": "number_of_repeatings",
#> "type": "value",
#> "value": 1000
#> },
#> {
#> "name": "number_of_exposures",
#> "type": "value",
#> "value": 100
#> },
#> {
#> "name": "volume_perEvent",
#> "type": "triangle",
#> "min": 0.001,
#> "max": 0.01,
#> "mode": 0.005
#> }
#> ],
#> "inflow": [
#> {
#> "PathogenID": 1,
#> "PathogenName": "Bacillus anthracis",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 2,
#> "PathogenName": "Burkholderia pseudomallei",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 3,
#> "PathogenName": "Campylobacter jejuni and Campylobacter coli",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 100,
#> "max": 1000000,
#> "Notes": "Raw wastewater Campylobacter spp.",
#> "ReferenceName": "WHO (2011): Guidelines for drinking-water quality. World Health Organisation, Table 7.6",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=159"
#> },
#> {
#> "PathogenID": 4,
#> "PathogenName": "Coxiella burnetii",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 5,
#> "PathogenName": "Escherichia coli enterohemorrhagic (EHEC)",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 6,
#> "PathogenName": "Escherichia coli",
#> "PathogenGroup": "Bacteria",
#> "simulate": 1,
#> "type": "log10_norm",
#> "min": 170000,
#> "max": 1700000000,
#> "Notes": "Raw wastewater 17% pathogenic fraction",
#> "ReferenceName": "WHO (2011): Guidelines for drinking-water quality. World Health Organisation, Table 7.6, Grant et al. (1996)",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=159, https://doi.org/10.1128/AEM.62.9.3466-3469.1996"
#> },
#> {
#> "PathogenID": 7,
#> "PathogenName": "Francisella tularensis",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 8,
#> "PathogenName": "Legionella pneumophila",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 9,
#> "PathogenName": "Listeria monocytogenes (Death as response)",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 10,
#> "PathogenName": "Listeria monocytogenes (Infection)",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 11,
#> "PathogenName": "Listeria monocytogenes (Stillbirths)",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 12,
#> "PathogenName": "Mycobacterium avium",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 13,
#> "PathogenName": "Pseudomonas aeruginosa (Contact lens)",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 14,
#> "PathogenName": "Pseudomonas aeruginosa (bacterimia)",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 15,
#> "PathogenName": "Rickettsia rickettsi",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 16,
#> "PathogenName": "Salmonella Typhi",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 17,
#> "PathogenName": "Salmonella anatum",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 18,
#> "PathogenName": "Salmonella meleagridis",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 19,
#> "PathogenName": "Salmonella nontyphoid",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 20,
#> "PathogenName": "Salmonella serotype newport",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 21,
#> "PathogenName": "Shigella",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 22,
#> "PathogenName": "Staphylococcus aureus",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 23,
#> "PathogenName": "Vibrio cholerae",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 100,
#> "max": 1000000,
#> "Notes": "Raw wastewater",
#> "ReferenceName": "WHO (2011): Guidelines for drinking-water quality. World Health Organisation, Table 7.6",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=159"
#> },
#> {
#> "PathogenID": 24,
#> "PathogenName": "Yersinia pestis",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 25,
#> "PathogenName": "Adenovirus",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 26,
#> "PathogenName": "Echovirus",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 27,
#> "PathogenName": "Enteroviruses",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 1,
#> "max": 1000,
#> "Notes": "Raw wastewater",
#> "ReferenceName": "WHO (2011): Guidelines for drinking-water quality. World Health Organisation, Table 7.6",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=159"
#> },
#> {
#> "PathogenID": 28,
#> "PathogenName": "Influenza",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 29,
#> "PathogenName": "Lassa virus",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 30,
#> "PathogenName": "Poliovirus",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 31,
#> "PathogenName": "Rhinovirus",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 32,
#> "PathogenName": "Rotavirus",
#> "PathogenGroup": "Viruses",
#> "simulate": 1,
#> "type": "log10_norm",
#> "min": 50,
#> "max": 5000,
#> "Notes": "Raw wastewater",
#> "ReferenceName": "WHO (2011): Guidelines for drinking-water quality. World Health Organisation, Table 7.6",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=159"
#> },
#> {
#> "PathogenID": 33,
#> "PathogenName": "SARS",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 34,
#> "PathogenName": "Cryptosporidium parvum and Cryptosporidium hominis",
#> "PathogenGroup": "Protozoa",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 1,
#> "max": 10000,
#> "sdlog": "NA\"Raw wastewater\"",
#> "Notes": "WHO (2011): Guidelines for drinking-water quality. World Health Organisation, Table 7.6",
#> "ReferenceName": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=159"
#> },
#> {
#> "PathogenID": 35,
#> "PathogenName": "Endamoeba coli",
#> "PathogenGroup": "Protozoa",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> },
#> {
#> "PathogenID": 36,
#> "PathogenName": "Giardia duodenalis",
#> "PathogenGroup": "Protozoa",
#> "simulate": 1,
#> "type": "log10_norm",
#> "min": 1,
#> "max": 10000,
#> "Notes": "Raw wastewater",
#> "ReferenceName": "WHO (2011): Guidelines for drinking-water quality. World Health Organisation, Table 7.6",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=159"
#> },
#> {
#> "PathogenID": 37,
#> "PathogenName": "Naegleria fowleri",
#> "PathogenGroup": "Protozoa",
#> "simulate": 0,
#> "type": "log10_norm",
#> "min": 10,
#> "max": 10000,
#> "Notes": "default"
#> }
#> ],
#> "treatment": {
#> "processes": [
#> {
#> "TreatmentID": 1,
#> "TreatmentName": "Conventional clarification",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 0.2,
#> "max": 2,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 1,
#> "TreatmentName": "Conventional clarification",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 1,
#> "max": 2,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 1,
#> "TreatmentName": "Conventional clarification",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 0.1,
#> "max": 3.4,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 2,
#> "TreatmentName": "Dissolved air flotation",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 0.6,
#> "max": 2.6,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 3,
#> "TreatmentName": "High-rate clarification",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 2,
#> "max": 2.8,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 4,
#> "TreatmentName": "Lime softening",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 1,
#> "max": 4,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 4,
#> "TreatmentName": "Lime softening",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 0,
#> "max": 2,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 4,
#> "TreatmentName": "Lime softening",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 2,
#> "max": 4,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 5,
#> "TreatmentName": "Granular high-rate filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 0.2,
#> "max": 4.4,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 5,
#> "TreatmentName": "Granular high-rate filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 0.4,
#> "max": 3.3,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 5,
#> "TreatmentName": "Granular high-rate filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 0,
#> "max": 3.5,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 7,
#> "TreatmentName": "Precoat filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 0.2,
#> "max": 2.3,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 7,
#> "TreatmentName": "Precoat filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 3,
#> "max": 6.7,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 7,
#> "TreatmentName": "Precoat filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 1,
#> "max": 1.7,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 8,
#> "TreatmentName": "Slow sand filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 2,
#> "max": 6,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 8,
#> "TreatmentName": "Slow sand filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 0.3,
#> "max": 5,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 8,
#> "TreatmentName": "Slow sand filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 0.25,
#> "max": 4,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 9,
#> "TreatmentName": "Bank filtration",
#> "TreatmentGroup": "Natural attenuation",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 2,
#> "max": 6,
#> "mean": 4,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 9,
#> "TreatmentName": "Bank filtration",
#> "TreatmentGroup": "Natural attenuation",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 1,
#> "max": 2,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 9,
#> "TreatmentName": "Bank filtration",
#> "TreatmentGroup": "Natural attenuation",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 2.1,
#> "max": 8.3,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 10,
#> "TreatmentName": "Roughing filters",
#> "TreatmentGroup": "Pretreatment",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 0.2,
#> "max": 2.3,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
#> "ReferenceLink": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=162"
#> },
#> {
#> "TreatmentID": 11,
#> "TreatmentName": "Storage reservoirs",
#> "TreatmentGroup": "Pretreatment",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 0.7,
#> "max": 2.2,
#> "ReferenceName": "WHO (2011): Drinking water guideline, Table 7.7",
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#> {
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#> "PathogenName": "Escherichia coli enterohemorrhagic (EHEC)"
#> },
#> {
#> "PathogenID": 6,
#> "PathogenName": "Escherichia coli",
#> "infection_to_illness": 0.25,
#> "dalys_per_case": 0.0547,
#> "ReferenceNameInfection": "Bartak et al. (2014) Application of risk-based assessment and management to riverbank filtration sites in India",
#> "ReferenceNameDalys": "Havelaar and Melse (2003) Table 2.7 Quantifying public health risk in the WHO Guidelines - A burden of disease approach"
#> },
#> {
#> "PathogenID": 7,
#> "PathogenName": "Francisella tularensis"
#> },
#> {
#> "PathogenID": 8,
#> "PathogenName": "Legionella pneumophila"
#> },
#> {
#> "PathogenID": 9,
#> "PathogenName": "Listeria monocytogenes (Death as response)"
#> },
#> {
#> "PathogenID": 10,
#> "PathogenName": "Listeria monocytogenes (Infection)"
#> },
#> {
#> "PathogenID": 11,
#> "PathogenName": "Listeria monocytogenes (Stillbirths)"
#> },
#> {
#> "PathogenID": 12,
#> "PathogenName": "Mycobacterium avium"
#> },
#> {
#> "PathogenID": 13,
#> "PathogenName": "Pseudomonas aeruginosa (Contact lens)"
#> },
#> {
#> "PathogenID": 14,
#> "PathogenName": "Pseudomonas aeruginosa (bacterimia)"
#> },
#> {
#> "PathogenID": 15,
#> "PathogenName": "Rickettsia rickettsi"
#> },
#> {
#> "PathogenID": 16,
#> "PathogenName": "Salmonella Typhi"
#> },
#> {
#> "PathogenID": 17,
#> "PathogenName": "Salmonella anatum"
#> },
#> {
#> "PathogenID": 18,
#> "PathogenName": "Salmonella meleagridis"
#> },
#> {
#> "PathogenID": 19,
#> "PathogenName": "Salmonella nontyphoid"
#> },
#> {
#> "PathogenID": 20,
#> "PathogenName": "Salmonella serotype newport"
#> },
#> {
#> "PathogenID": 21,
#> "PathogenName": "Shigella"
#> },
#> {
#> "PathogenID": 22,
#> "PathogenName": "Staphylococcus aureus"
#> },
#> {
#> "PathogenID": 23,
#> "PathogenName": "Vibrio cholerae"
#> },
#> {
#> "PathogenID": 24,
#> "PathogenName": "Yersinia pestis"
#> },
#> {
#> "PathogenID": 25,
#> "PathogenName": "Adenovirus"
#> },
#> {
#> "PathogenID": 26,
#> "PathogenName": "Echovirus"
#> },
#> {
#> "PathogenID": 27,
#> "PathogenName": "Enteroviruses"
#> },
#> {
#> "PathogenID": 28,
#> "PathogenName": "Influenza"
#> },
#> {
#> "PathogenID": 29,
#> "PathogenName": "Lassa virus"
#> },
#> {
#> "PathogenID": 30,
#> "PathogenName": "Poliovirus"
#> },
#> {
#> "PathogenID": 31,
#> "PathogenName": "Rhinovirus"
#> },
#> {
#> "PathogenID": 32,
#> "PathogenName": "Rotavirus",
#> "infection_to_illness": 0.5,
#> "dalys_per_case": 0.014,
#> "ReferenceNameInfection": "WHO (2011): Guidelines for drinking-water quality. World Health Organisation, Table 7.4",
#> "ReferenceNameDalys": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=155"
#> },
#> {
#> "PathogenID": 33,
#> "PathogenName": "SARS"
#> },
#> {
#> "PathogenID": 34,
#> "PathogenName": "Cryptosporidium parvum and Cryptosporidium hominis"
#> },
#> {
#> "PathogenID": 35,
#> "PathogenName": "Endamoeba coli"
#> },
#> {
#> "PathogenID": 36,
#> "PathogenName": "Giardia duodenalis",
#> "infection_to_illness": 0.7,
#> "dalys_per_case": 0.0015,
#> "ReferenceNameInfection": "WHO (2011): Guidelines for drinking-water quality. World Health Organisation, Table 7.4",
#> "ReferenceNameDalys": "http://apps.who.int/iris/bitstream/10665/44584/1/9789241548151_eng.pdf#page=155"
#> },
#> {
#> "PathogenID": 37,
#> "PathogenName": "Naegleria fowleri"
#> }
#> ]
#> }