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JSON input configuration generated with R script (data-raw/config_json.R)

Usage

data(config_dummy_json)

Format

A json list with all configuration parameters used by opencpu_simulate_risk, which are passed to simulate_risk

Examples

data("config_dummy_json")
config_dummy_json
#> {
#>   "exposure": [
#>     {
#>       "name": "number_of_repeatings",
#>       "type": "value",
#>       "value": 10
#>     },
#>     {
#>       "name": "number_of_exposures",
#>       "type": "value",
#>       "value": 365
#>     },
#>     {
#>       "name": "volume_perEvent",
#>       "type": "triangle",
#>       "min": 0.5,
#>       "max": 3,
#>       "mode": 1.5,
#>       "mean": 2
#>     }
#>   ],
#>   "inflow": [
#>     {
#>       "PathogenID": 1,
#>       "PathogenName": "Bacillus anthracis",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 2,
#>       "PathogenName": "Burkholderia pseudomallei",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 3,
#>       "PathogenName": "Campylobacter jejuni and Campylobacter coli",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 1,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 4,
#>       "PathogenName": "Coxiella burnetii",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 5,
#>       "PathogenName": "Escherichia coli enterohemorrhagic (EHEC)",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 6,
#>       "PathogenName": "Escherichia coli",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 7,
#>       "PathogenName": "Francisella tularensis",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 8,
#>       "PathogenName": "Legionella pneumophila",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 9,
#>       "PathogenName": "Listeria monocytogenes (Death as response)",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 10,
#>       "PathogenName": "Listeria monocytogenes (Infection)",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 11,
#>       "PathogenName": "Listeria monocytogenes (Stillbirths)",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 12,
#>       "PathogenName": "Mycobacterium avium",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 13,
#>       "PathogenName": "Pseudomonas aeruginosa (Contact lens)",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 14,
#>       "PathogenName": "Pseudomonas aeruginosa (bacterimia)",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 15,
#>       "PathogenName": "Rickettsia rickettsi",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 16,
#>       "PathogenName": "Salmonella Typhi",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 17,
#>       "PathogenName": "Salmonella anatum",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 18,
#>       "PathogenName": "Salmonella meleagridis",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 19,
#>       "PathogenName": "Salmonella nontyphoid",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 20,
#>       "PathogenName": "Salmonella serotype newport",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 21,
#>       "PathogenName": "Shigella",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 22,
#>       "PathogenName": "Staphylococcus aureus",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 23,
#>       "PathogenName": "Vibrio cholerae",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 24,
#>       "PathogenName": "Yersinia pestis",
#>       "PathogenGroup": "Bacteria",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 25,
#>       "PathogenName": "Adenovirus",
#>       "PathogenGroup": "Viruses",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 26,
#>       "PathogenName": "Echovirus",
#>       "PathogenGroup": "Viruses",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 27,
#>       "PathogenName": "Enteroviruses",
#>       "PathogenGroup": "Viruses",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 28,
#>       "PathogenName": "Influenza",
#>       "PathogenGroup": "Viruses",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 29,
#>       "PathogenName": "Lassa virus",
#>       "PathogenGroup": "Viruses",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 30,
#>       "PathogenName": "Poliovirus",
#>       "PathogenGroup": "Viruses",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 31,
#>       "PathogenName": "Rhinovirus",
#>       "PathogenGroup": "Viruses",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 32,
#>       "PathogenName": "Rotavirus",
#>       "PathogenGroup": "Viruses",
#>       "simulate": 1,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 33,
#>       "PathogenName": "SARS",
#>       "PathogenGroup": "Viruses",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 34,
#>       "PathogenName": "Cryptosporidium parvum and Cryptosporidium hominis",
#>       "PathogenGroup": "Protozoa",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 35,
#>       "PathogenName": "Endamoeba coli",
#>       "PathogenGroup": "Protozoa",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 36,
#>       "PathogenName": "Giardia duodenalis",
#>       "PathogenGroup": "Protozoa",
#>       "simulate": 1,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     },
#>     {
#>       "PathogenID": 37,
#>       "PathogenName": "Naegleria fowleri",
#>       "PathogenGroup": "Protozoa",
#>       "simulate": 0,
#>       "type": "uniform",
#>       "min": 10,
#>       "max": 10000
#>     }
#>   ],
#>   "treatment": {
#>     "processes": [
#>       {
#>         "TreatmentID": 1,
#>         "TreatmentName": "Conventional clarification",
#>         "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 0.2,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 1,
#>         "TreatmentName": "Conventional clarification",
#>         "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 1,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 1,
#>         "TreatmentName": "Conventional clarification",
#>         "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#>         "PathogenGroup": "Viruses",
#>         "type": "uniform",
#>         "min": 0.1,
#>         "max": 3.4
#>       },
#>       {
#>         "TreatmentID": 2,
#>         "TreatmentName": "Dissolved air flotation",
#>         "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 0.6,
#>         "max": 2.6
#>       },
#>       {
#>         "TreatmentID": 3,
#>         "TreatmentName": "High-rate clarification",
#>         "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 2.8
#>       },
#>       {
#>         "TreatmentID": 4,
#>         "TreatmentName": "Lime softening",
#>         "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 1,
#>         "max": 4
#>       },
#>       {
#>         "TreatmentID": 4,
#>         "TreatmentName": "Lime softening",
#>         "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 0,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 4,
#>         "TreatmentName": "Lime softening",
#>         "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#>         "PathogenGroup": "Viruses",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 4
#>       },
#>       {
#>         "TreatmentID": 5,
#>         "TreatmentName": "Granular high-rate filtration",
#>         "TreatmentGroup": "Filtration",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 0.2,
#>         "max": 4.4
#>       },
#>       {
#>         "TreatmentID": 5,
#>         "TreatmentName": "Granular high-rate filtration",
#>         "TreatmentGroup": "Filtration",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 0.4,
#>         "max": 3.3
#>       },
#>       {
#>         "TreatmentID": 5,
#>         "TreatmentName": "Granular high-rate filtration",
#>         "TreatmentGroup": "Filtration",
#>         "PathogenGroup": "Viruses",
#>         "type": "uniform",
#>         "min": 0,
#>         "max": 3.5
#>       },
#>       {
#>         "TreatmentID": 6,
#>         "TreatmentName": "Membrane filtration (micro, ultra-, nanofiltration, reverse osmosis)",
#>         "TreatmentGroup": "Filtration",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 1,
#>         "max": 7
#>       },
#>       {
#>         "TreatmentID": 6,
#>         "TreatmentName": "Membrane filtration (micro, ultra-, nanofiltration, reverse osmosis)",
#>         "TreatmentGroup": "Filtration",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 2.3,
#>         "max": 7
#>       },
#>       {
#>         "TreatmentID": 6,
#>         "TreatmentName": "Membrane filtration (micro, ultra-, nanofiltration, reverse osmosis)",
#>         "TreatmentGroup": "Filtration",
#>         "PathogenGroup": "Viruses",
#>         "type": "uniform",
#>         "min": 1,
#>         "max": 6.5
#>       },
#>       {
#>         "TreatmentID": 7,
#>         "TreatmentName": "Precoat filtration",
#>         "TreatmentGroup": "Filtration",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 0.2,
#>         "max": 2.3
#>       },
#>       {
#>         "TreatmentID": 7,
#>         "TreatmentName": "Precoat filtration",
#>         "TreatmentGroup": "Filtration",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 3,
#>         "max": 6.7
#>       },
#>       {
#>         "TreatmentID": 7,
#>         "TreatmentName": "Precoat filtration",
#>         "TreatmentGroup": "Filtration",
#>         "PathogenGroup": "Viruses",
#>         "type": "uniform",
#>         "min": 1,
#>         "max": 1.7
#>       },
#>       {
#>         "TreatmentID": 8,
#>         "TreatmentName": "Slow sand filtration",
#>         "TreatmentGroup": "Filtration",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 6
#>       },
#>       {
#>         "TreatmentID": 8,
#>         "TreatmentName": "Slow sand filtration",
#>         "TreatmentGroup": "Filtration",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 0.3,
#>         "max": 5
#>       },
#>       {
#>         "TreatmentID": 8,
#>         "TreatmentName": "Slow sand filtration",
#>         "TreatmentGroup": "Filtration",
#>         "PathogenGroup": "Viruses",
#>         "type": "uniform",
#>         "min": 0.25,
#>         "max": 4
#>       },
#>       {
#>         "TreatmentID": 9,
#>         "TreatmentName": "Bank filtration",
#>         "TreatmentGroup": "Pretreatment",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 6
#>       },
#>       {
#>         "TreatmentID": 9,
#>         "TreatmentName": "Bank filtration",
#>         "TreatmentGroup": "Pretreatment",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 1,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 9,
#>         "TreatmentName": "Bank filtration",
#>         "TreatmentGroup": "Pretreatment",
#>         "PathogenGroup": "Viruses",
#>         "type": "uniform",
#>         "min": 2.1,
#>         "max": 8.3
#>       },
#>       {
#>         "TreatmentID": 10,
#>         "TreatmentName": "Roughing filters",
#>         "TreatmentGroup": "Pretreatment",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 0.2,
#>         "max": 2.3
#>       },
#>       {
#>         "TreatmentID": 11,
#>         "TreatmentName": "Storage reservoirs",
#>         "TreatmentGroup": "Pretreatment",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 0.7,
#>         "max": 2.2
#>       },
#>       {
#>         "TreatmentID": 11,
#>         "TreatmentName": "Storage reservoirs",
#>         "TreatmentGroup": "Pretreatment",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 1.4,
#>         "max": 2.3
#>       },
#>       {
#>         "TreatmentID": 12,
#>         "TreatmentName": "Chlorine",
#>         "TreatmentGroup": "Primary disinfection",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 12,
#>         "TreatmentName": "Chlorine",
#>         "TreatmentGroup": "Primary disinfection",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 12,
#>         "TreatmentName": "Chlorine",
#>         "TreatmentGroup": "Primary disinfection",
#>         "PathogenGroup": "Viruses",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 13,
#>         "TreatmentName": "Chlorine dioxide",
#>         "TreatmentGroup": "Primary disinfection",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 13,
#>         "TreatmentName": "Chlorine dioxide",
#>         "TreatmentGroup": "Primary disinfection",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 13,
#>         "TreatmentName": "Chlorine dioxide",
#>         "TreatmentGroup": "Primary disinfection",
#>         "PathogenGroup": "Viruses",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 14,
#>         "TreatmentName": "Ozone",
#>         "TreatmentGroup": "Primary disinfection",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 14,
#>         "TreatmentName": "Ozone",
#>         "TreatmentGroup": "Primary disinfection",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 14,
#>         "TreatmentName": "Ozone",
#>         "TreatmentGroup": "Primary disinfection",
#>         "PathogenGroup": "Viruses",
#>         "type": "uniform",
#>         "min": 2,
#>         "max": 2
#>       },
#>       {
#>         "TreatmentID": 15,
#>         "TreatmentName": "UV",
#>         "TreatmentGroup": "Primary disinfection",
#>         "PathogenGroup": "Bacteria",
#>         "type": "uniform",
#>         "min": 4,
#>         "max": 4
#>       },
#>       {
#>         "TreatmentID": 15,
#>         "TreatmentName": "UV",
#>         "TreatmentGroup": "Primary disinfection",
#>         "PathogenGroup": "Protozoa",
#>         "type": "uniform",
#>         "min": 4,
#>         "max": 4
#>       },
#>       {
#>         "TreatmentID": 15,
#>         "TreatmentName": "UV",
#>         "TreatmentGroup": "Primary disinfection",
#>         "PathogenGroup": "Viruses",
#>         "type": "uniform",
#>         "min": 4,
#>         "max": 4
#>       }
#>     ],
#>     "schemes": [
#>       {
#>         "TreatmentSchemeID": 1,
#>         "TreatmentSchemeName": "Berlin (BF + Slow sand)",
#>         "TreatmentID": 8,
#>         "TreatmentName": "Slow sand filtration"
#>       },
#>       {
#>         "TreatmentSchemeID": 1,
#>         "TreatmentSchemeName": "Berlin (BF + Slow sand)",
#>         "TreatmentID": 9,
#>         "TreatmentName": "Bank filtration"
#>       },
#>       {
#>         "TreatmentSchemeID": 2,
#>         "TreatmentSchemeName": "Depth & surface filtration",
#>         "TreatmentID": 1,
#>         "TreatmentName": "Conventional clarification"
#>       },
#>       {
#>         "TreatmentSchemeID": 2,
#>         "TreatmentSchemeName": "Depth & surface filtration",
#>         "TreatmentID": 5,
#>         "TreatmentName": "Granular high-rate filtration"
#>       },
#>       {
#>         "TreatmentSchemeID": 2,
#>         "TreatmentSchemeName": "Depth & surface filtration",
#>         "TreatmentID": 15,
#>         "TreatmentName": "UV"
#>       }
#>     ]
#>   },
#>   "doseresponse": [
#>     {
#>       "PathogenID": 1,
#>       "PathogenName": "Bacillus anthracis",
#>       "PathogenGroup": "Bacteria",
#>       "Best fit model*": "exponential",
#>       "k": 0,
#>       "Host type": "guinea pig",
#>       "Dose units": "spores",
#>       "Route": "inhalation",
#>       "Response": "death",
#>       "Reference": "Druett 1953",
#>       "Link": "http://qmrawiki.canr.msu.edu/index.php/Bacillus_anthracis:_Dose_Response_Models"
#>     },
#>     {
#>       "PathogenID": 2,
#>       "PathogenName": "Burkholderia pseudomallei",
#>       "PathogenGroup": "Bacteria",
#>       "Best fit model*": "beta-Poisson",
#>       "alpha": 0.328,
#>       "N50": 5430,
#>       "Host type": "C57BL/6 mice and diabetic rat",
#>       "Dose units": "CFU",
#>       "Route": "intranasal,intraperitoneal",
#>       "Response": "death",
#>       "Reference": "Liu, Koo et al. 2002 and Brett and Woods 1996",
#>       "Link": "http://qmrawiki.canr.msu.edu/index.php/Burkholderia_pseudomallei:_Dose_Response_Models"
#>     },
#>     {
#>       "PathogenID": 3,
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#>       "PathogenGroup": "Bacteria",
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#>       "alpha": 0.144,
#>       "N50": 890,
#>       "Host type": "human",
#>       "Dose units": "CFU",
#>       "Route": "oral (in milk)",
#>       "Response": "infection",
#>       "Reference": "Black et al 1988",
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#>     {
#>       "PathogenID": 4,
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#>       "PathogenGroup": "Bacteria",
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#>       "alpha": 0.357,
#>       "N50": 493000000,
#>       "Host type": "C57BL/1OScN mice",
#>       "Dose units": "PFU",
#>       "Route": "intraperitoneal",
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#>       "Reference": "Williams et al, 1982",
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#>     {
#>       "PathogenID": 5,
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#>       "Best fit model*": "exponential",
#>       "k": 0.0002,
#>       "Host type": "pig",
#>       "Dose units": "CFU",
#>       "Route": "oral (in food)",
#>       "Response": "shedding in feces",
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#>     {
#>       "PathogenID": 6,
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#>       "alpha": 0.155,
#>       "N50": 2110000,
#>       "Host type": "human",
#>       "Dose units": "CFU",
#>       "Route": "oral (in milk)",
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#>     {
#>       "PathogenID": 7,
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#>       "Best fit model*": "exponential",
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#>       "Host type": "monkeys",
#>       "Dose units": "CFU",
#>       "Route": "inhalation",
#>       "Response": "death",
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#>       "k": 0.0599,
#>       "Host type": "guinea pig",
#>       "Dose units": "CFU",
#>       "Route": "inhalation",
#>       "Response": "infection",
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#>     {
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#>       "Route": "oral",
#>       "Response": "death",
#>       "Reference": "Golnazarian, Donnelly et al. 1989",
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#>       "Route": "oral",
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#>       "Route": "oral",
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#>       "Reference": "Smith, Williams2007",
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#>       "Route": "oral",
#>       "Response": "infection",
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#>     {
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#>       "Route": "contact lens",
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#>       "Host type": "Swiss webster mice (5day old)",
#>       "Dose units": "CFU",
#>       "Route": "injected in eyelids",
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#>       "Reference": "Hazlett, Rosen et al. 1978",
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#>       "Dose units": "CFU",
#>       "Response": "morbidity",
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#>       "Route": "oral, in milk",
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#>     {
#>       "PathogenID": 17,
#>       "PathogenName": "Salmonella anatum"
#>     },
#>     {
#>       "PathogenID": 18,
#>       "PathogenName": "Salmonella meleagridis"
#>     },
#>     {
#>       "PathogenID": 19,
#>       "PathogenName": "Salmonella nontyphoid"
#>     },
#>     {
#>       "PathogenID": 20,
#>       "PathogenName": "Salmonella serotype newport"
#>     },
#>     {
#>       "PathogenID": 21,
#>       "PathogenName": "Shigella"
#>     },
#>     {
#>       "PathogenID": 22,
#>       "PathogenName": "Staphylococcus aureus"
#>     },
#>     {
#>       "PathogenID": 23,
#>       "PathogenName": "Vibrio cholerae"
#>     },
#>     {
#>       "PathogenID": 24,
#>       "PathogenName": "Yersinia pestis"
#>     },
#>     {
#>       "PathogenID": 25,
#>       "PathogenName": "Adenovirus"
#>     },
#>     {
#>       "PathogenID": 26,
#>       "PathogenName": "Echovirus"
#>     },
#>     {
#>       "PathogenID": 27,
#>       "PathogenName": "Enteroviruses"
#>     },
#>     {
#>       "PathogenID": 28,
#>       "PathogenName": "Influenza"
#>     },
#>     {
#>       "PathogenID": 29,
#>       "PathogenName": "Lassa virus"
#>     },
#>     {
#>       "PathogenID": 30,
#>       "PathogenName": "Poliovirus"
#>     },
#>     {
#>       "PathogenID": 31,
#>       "PathogenName": "Rhinovirus"
#>     },
#>     {
#>       "PathogenID": 32,
#>       "PathogenName": "Rotavirus",
#>       "infection_to_illness": 0.03,
#>       "dalys_per_case": 0.014
#>     },
#>     {
#>       "PathogenID": 33,
#>       "PathogenName": "SARS"
#>     },
#>     {
#>       "PathogenID": 34,
#>       "PathogenName": "Cryptosporidium parvum and Cryptosporidium hominis"
#>     },
#>     {
#>       "PathogenID": 35,
#>       "PathogenName": "Endamoeba coli"
#>     },
#>     {
#>       "PathogenID": 36,
#>       "PathogenName": "Giardia duodenalis",
#>       "infection_to_illness": 0.3,
#>       "dalys_per_case": 0.0015
#>     },
#>     {
#>       "PathogenID": 37,
#>       "PathogenName": "Naegleria fowleri"
#>     }
#>   ]
#> }