config_dummy_json: dummy configuration for kwb.qmra::opencpu_simulate_risk() in JSON format
Source:R/datasets.R
config_default_json.RdJSON input configuration generated with R script (data-raw/config_json.R)
Usage
data(config_dummy_json)Format
A json list with all configuration parameters used by opencpu_simulate_risk, which are passed to simulate_risk
Examples
data("config_dummy_json")
config_dummy_json
#> {
#> "exposure": [
#> {
#> "name": "number_of_repeatings",
#> "type": "value",
#> "value": 10
#> },
#> {
#> "name": "number_of_exposures",
#> "type": "value",
#> "value": 365
#> },
#> {
#> "name": "volume_perEvent",
#> "type": "triangle",
#> "min": 0.5,
#> "max": 3,
#> "mode": 1.5,
#> "mean": 2
#> }
#> ],
#> "inflow": [
#> {
#> "PathogenID": 1,
#> "PathogenName": "Bacillus anthracis",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 2,
#> "PathogenName": "Burkholderia pseudomallei",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 3,
#> "PathogenName": "Campylobacter jejuni and Campylobacter coli",
#> "PathogenGroup": "Bacteria",
#> "simulate": 1,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 4,
#> "PathogenName": "Coxiella burnetii",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 5,
#> "PathogenName": "Escherichia coli enterohemorrhagic (EHEC)",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 6,
#> "PathogenName": "Escherichia coli",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 7,
#> "PathogenName": "Francisella tularensis",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 8,
#> "PathogenName": "Legionella pneumophila",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 9,
#> "PathogenName": "Listeria monocytogenes (Death as response)",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 10,
#> "PathogenName": "Listeria monocytogenes (Infection)",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 11,
#> "PathogenName": "Listeria monocytogenes (Stillbirths)",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 12,
#> "PathogenName": "Mycobacterium avium",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 13,
#> "PathogenName": "Pseudomonas aeruginosa (Contact lens)",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 14,
#> "PathogenName": "Pseudomonas aeruginosa (bacterimia)",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 15,
#> "PathogenName": "Rickettsia rickettsi",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 16,
#> "PathogenName": "Salmonella Typhi",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 17,
#> "PathogenName": "Salmonella anatum",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 18,
#> "PathogenName": "Salmonella meleagridis",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 19,
#> "PathogenName": "Salmonella nontyphoid",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 20,
#> "PathogenName": "Salmonella serotype newport",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 21,
#> "PathogenName": "Shigella",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 22,
#> "PathogenName": "Staphylococcus aureus",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 23,
#> "PathogenName": "Vibrio cholerae",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 24,
#> "PathogenName": "Yersinia pestis",
#> "PathogenGroup": "Bacteria",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 25,
#> "PathogenName": "Adenovirus",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 26,
#> "PathogenName": "Echovirus",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 27,
#> "PathogenName": "Enteroviruses",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 28,
#> "PathogenName": "Influenza",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 29,
#> "PathogenName": "Lassa virus",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 30,
#> "PathogenName": "Poliovirus",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 31,
#> "PathogenName": "Rhinovirus",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 32,
#> "PathogenName": "Rotavirus",
#> "PathogenGroup": "Viruses",
#> "simulate": 1,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 33,
#> "PathogenName": "SARS",
#> "PathogenGroup": "Viruses",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 34,
#> "PathogenName": "Cryptosporidium parvum and Cryptosporidium hominis",
#> "PathogenGroup": "Protozoa",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 35,
#> "PathogenName": "Endamoeba coli",
#> "PathogenGroup": "Protozoa",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 36,
#> "PathogenName": "Giardia duodenalis",
#> "PathogenGroup": "Protozoa",
#> "simulate": 1,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> },
#> {
#> "PathogenID": 37,
#> "PathogenName": "Naegleria fowleri",
#> "PathogenGroup": "Protozoa",
#> "simulate": 0,
#> "type": "uniform",
#> "min": 10,
#> "max": 10000
#> }
#> ],
#> "treatment": {
#> "processes": [
#> {
#> "TreatmentID": 1,
#> "TreatmentName": "Conventional clarification",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 0.2,
#> "max": 2
#> },
#> {
#> "TreatmentID": 1,
#> "TreatmentName": "Conventional clarification",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 1,
#> "max": 2
#> },
#> {
#> "TreatmentID": 1,
#> "TreatmentName": "Conventional clarification",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 0.1,
#> "max": 3.4
#> },
#> {
#> "TreatmentID": 2,
#> "TreatmentName": "Dissolved air flotation",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 0.6,
#> "max": 2.6
#> },
#> {
#> "TreatmentID": 3,
#> "TreatmentName": "High-rate clarification",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 2,
#> "max": 2.8
#> },
#> {
#> "TreatmentID": 4,
#> "TreatmentName": "Lime softening",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 1,
#> "max": 4
#> },
#> {
#> "TreatmentID": 4,
#> "TreatmentName": "Lime softening",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 0,
#> "max": 2
#> },
#> {
#> "TreatmentID": 4,
#> "TreatmentName": "Lime softening",
#> "TreatmentGroup": "Coagulation, flocculation and sedimentation",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 2,
#> "max": 4
#> },
#> {
#> "TreatmentID": 5,
#> "TreatmentName": "Granular high-rate filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 0.2,
#> "max": 4.4
#> },
#> {
#> "TreatmentID": 5,
#> "TreatmentName": "Granular high-rate filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 0.4,
#> "max": 3.3
#> },
#> {
#> "TreatmentID": 5,
#> "TreatmentName": "Granular high-rate filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 0,
#> "max": 3.5
#> },
#> {
#> "TreatmentID": 6,
#> "TreatmentName": "Membrane filtration (micro, ultra-, nanofiltration, reverse osmosis)",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 1,
#> "max": 7
#> },
#> {
#> "TreatmentID": 6,
#> "TreatmentName": "Membrane filtration (micro, ultra-, nanofiltration, reverse osmosis)",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 2.3,
#> "max": 7
#> },
#> {
#> "TreatmentID": 6,
#> "TreatmentName": "Membrane filtration (micro, ultra-, nanofiltration, reverse osmosis)",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 1,
#> "max": 6.5
#> },
#> {
#> "TreatmentID": 7,
#> "TreatmentName": "Precoat filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 0.2,
#> "max": 2.3
#> },
#> {
#> "TreatmentID": 7,
#> "TreatmentName": "Precoat filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 3,
#> "max": 6.7
#> },
#> {
#> "TreatmentID": 7,
#> "TreatmentName": "Precoat filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 1,
#> "max": 1.7
#> },
#> {
#> "TreatmentID": 8,
#> "TreatmentName": "Slow sand filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 2,
#> "max": 6
#> },
#> {
#> "TreatmentID": 8,
#> "TreatmentName": "Slow sand filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 0.3,
#> "max": 5
#> },
#> {
#> "TreatmentID": 8,
#> "TreatmentName": "Slow sand filtration",
#> "TreatmentGroup": "Filtration",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 0.25,
#> "max": 4
#> },
#> {
#> "TreatmentID": 9,
#> "TreatmentName": "Bank filtration",
#> "TreatmentGroup": "Pretreatment",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 2,
#> "max": 6
#> },
#> {
#> "TreatmentID": 9,
#> "TreatmentName": "Bank filtration",
#> "TreatmentGroup": "Pretreatment",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 1,
#> "max": 2
#> },
#> {
#> "TreatmentID": 9,
#> "TreatmentName": "Bank filtration",
#> "TreatmentGroup": "Pretreatment",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 2.1,
#> "max": 8.3
#> },
#> {
#> "TreatmentID": 10,
#> "TreatmentName": "Roughing filters",
#> "TreatmentGroup": "Pretreatment",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 0.2,
#> "max": 2.3
#> },
#> {
#> "TreatmentID": 11,
#> "TreatmentName": "Storage reservoirs",
#> "TreatmentGroup": "Pretreatment",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 0.7,
#> "max": 2.2
#> },
#> {
#> "TreatmentID": 11,
#> "TreatmentName": "Storage reservoirs",
#> "TreatmentGroup": "Pretreatment",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 1.4,
#> "max": 2.3
#> },
#> {
#> "TreatmentID": 12,
#> "TreatmentName": "Chlorine",
#> "TreatmentGroup": "Primary disinfection",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 2,
#> "max": 2
#> },
#> {
#> "TreatmentID": 12,
#> "TreatmentName": "Chlorine",
#> "TreatmentGroup": "Primary disinfection",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 2,
#> "max": 2
#> },
#> {
#> "TreatmentID": 12,
#> "TreatmentName": "Chlorine",
#> "TreatmentGroup": "Primary disinfection",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 2,
#> "max": 2
#> },
#> {
#> "TreatmentID": 13,
#> "TreatmentName": "Chlorine dioxide",
#> "TreatmentGroup": "Primary disinfection",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 2,
#> "max": 2
#> },
#> {
#> "TreatmentID": 13,
#> "TreatmentName": "Chlorine dioxide",
#> "TreatmentGroup": "Primary disinfection",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 2,
#> "max": 2
#> },
#> {
#> "TreatmentID": 13,
#> "TreatmentName": "Chlorine dioxide",
#> "TreatmentGroup": "Primary disinfection",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 2,
#> "max": 2
#> },
#> {
#> "TreatmentID": 14,
#> "TreatmentName": "Ozone",
#> "TreatmentGroup": "Primary disinfection",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 2,
#> "max": 2
#> },
#> {
#> "TreatmentID": 14,
#> "TreatmentName": "Ozone",
#> "TreatmentGroup": "Primary disinfection",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 2,
#> "max": 2
#> },
#> {
#> "TreatmentID": 14,
#> "TreatmentName": "Ozone",
#> "TreatmentGroup": "Primary disinfection",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 2,
#> "max": 2
#> },
#> {
#> "TreatmentID": 15,
#> "TreatmentName": "UV",
#> "TreatmentGroup": "Primary disinfection",
#> "PathogenGroup": "Bacteria",
#> "type": "uniform",
#> "min": 4,
#> "max": 4
#> },
#> {
#> "TreatmentID": 15,
#> "TreatmentName": "UV",
#> "TreatmentGroup": "Primary disinfection",
#> "PathogenGroup": "Protozoa",
#> "type": "uniform",
#> "min": 4,
#> "max": 4
#> },
#> {
#> "TreatmentID": 15,
#> "TreatmentName": "UV",
#> "TreatmentGroup": "Primary disinfection",
#> "PathogenGroup": "Viruses",
#> "type": "uniform",
#> "min": 4,
#> "max": 4
#> }
#> ],
#> "schemes": [
#> {
#> "TreatmentSchemeID": 1,
#> "TreatmentSchemeName": "Berlin (BF + Slow sand)",
#> "TreatmentID": 8,
#> "TreatmentName": "Slow sand filtration"
#> },
#> {
#> "TreatmentSchemeID": 1,
#> "TreatmentSchemeName": "Berlin (BF + Slow sand)",
#> "TreatmentID": 9,
#> "TreatmentName": "Bank filtration"
#> },
#> {
#> "TreatmentSchemeID": 2,
#> "TreatmentSchemeName": "Depth & surface filtration",
#> "TreatmentID": 1,
#> "TreatmentName": "Conventional clarification"
#> },
#> {
#> "TreatmentSchemeID": 2,
#> "TreatmentSchemeName": "Depth & surface filtration",
#> "TreatmentID": 5,
#> "TreatmentName": "Granular high-rate filtration"
#> },
#> {
#> "TreatmentSchemeID": 2,
#> "TreatmentSchemeName": "Depth & surface filtration",
#> "TreatmentID": 15,
#> "TreatmentName": "UV"
#> }
#> ]
#> },
#> "doseresponse": [
#> {
#> "PathogenID": 1,
#> "PathogenName": "Bacillus anthracis",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "exponential",
#> "k": 0,
#> "Host type": "guinea pig",
#> "Dose units": "spores",
#> "Route": "inhalation",
#> "Response": "death",
#> "Reference": "Druett 1953",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Bacillus_anthracis:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 2,
#> "PathogenName": "Burkholderia pseudomallei",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.328,
#> "N50": 5430,
#> "Host type": "C57BL/6 mice and diabetic rat",
#> "Dose units": "CFU",
#> "Route": "intranasal,intraperitoneal",
#> "Response": "death",
#> "Reference": "Liu, Koo et al. 2002 and Brett and Woods 1996",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Burkholderia_pseudomallei:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 3,
#> "PathogenName": "Campylobacter jejuni and Campylobacter coli",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.144,
#> "N50": 890,
#> "Host type": "human",
#> "Dose units": "CFU",
#> "Route": "oral (in milk)",
#> "Response": "infection",
#> "Reference": "Black et al 1988",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Campylobacter_jejuni_and_Campylobacter_coli:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 4,
#> "PathogenName": "Coxiella burnetii",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.357,
#> "N50": 493000000,
#> "Host type": "C57BL/1OScN mice",
#> "Dose units": "PFU",
#> "Route": "intraperitoneal",
#> "Response": "death",
#> "Reference": "Williams et al, 1982",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Coxiella_burnetii:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 5,
#> "PathogenName": "Escherichia coli enterohemorrhagic (EHEC)",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "exponential",
#> "k": 0.0002,
#> "Host type": "pig",
#> "Dose units": "CFU",
#> "Route": "oral (in food)",
#> "Response": "shedding in feces",
#> "Reference": "Cornick & Helgerson (2004)",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Escherichia_coli_enterohemorrhagic_(EHEC):_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 6,
#> "PathogenName": "Escherichia coli",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.155,
#> "N50": 2110000,
#> "Host type": "human",
#> "Dose units": "CFU",
#> "Route": "oral (in milk)",
#> "Response": "positive stool isolation",
#> "Reference": "DuPont et al. (1971)",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Escherichia_coli:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 7,
#> "PathogenName": "Francisella tularensis",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "exponential",
#> "k": 0.0473,
#> "Host type": "monkeys",
#> "Dose units": "CFU",
#> "Route": "inhalation",
#> "Response": "death",
#> "Reference": "Day and Berendt, 1972",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Francisella_tularensis:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 8,
#> "PathogenName": "Legionella pneumophila",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "exponential",
#> "k": 0.0599,
#> "Host type": "guinea pig",
#> "Dose units": "CFU",
#> "Route": "inhalation",
#> "Response": "infection",
#> "Reference": "Muller et al. (1983)",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Legionella_pneumophila:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 9,
#> "PathogenName": "Listeria monocytogenes (Death as response)",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "exponential",
#> "k": 0,
#> "Host type": "C57B1/6J mice",
#> "Dose units": "CFU",
#> "Route": "oral",
#> "Response": "death",
#> "Reference": "Golnazarian, Donnelly et al. 1989",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Listeria_monocytogenes_(Death_as_response):_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 10,
#> "PathogenName": "Listeria monocytogenes (Infection)",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.253,
#> "N50": 277,
#> "Host type": "C57Bl/6J mice",
#> "Dose units": "CFU",
#> "Route": "oral",
#> "Response": "infection",
#> "Reference": "Golnazarian",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Listeria_monocytogenes_(Infection):_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 11,
#> "PathogenName": "Listeria monocytogenes (Stillbirths)",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.0422,
#> "N50": 1780000000,
#> "Host type": "pooled",
#> "Dose units": "CFU",
#> "Route": "oral",
#> "Response": "stillbirths",
#> "Reference": "Smith, Williams2007",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Listeria_monocytogenes_(Stillbirths):_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 12,
#> "PathogenName": "Mycobacterium avium",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "exponential",
#> "k": 0.0007,
#> "Host type": "deer",
#> "Dose units": "CFU",
#> "Route": "oral",
#> "Response": "infection",
#> "Reference": "O'Brien et al(1976)",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Mycobacterium_avium:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 13,
#> "PathogenName": "Pseudomonas aeruginosa (Contact lens)",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.19,
#> "N50": 18500,
#> "Host type": "white rabbit",
#> "Dose units": "CFU",
#> "Route": "contact lens",
#> "Response": "corneal ulceration",
#> "Reference": "Lawin-Brussel et al. (1993)",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Pseudomonas_aeruginosa_(Contact_lens):_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 14,
#> "PathogenName": "Pseudomonas aeruginosa (bacterimia)",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "exponential",
#> "k": 0.0001,
#> "Host type": "Swiss webster mice (5day old)",
#> "Dose units": "CFU",
#> "Route": "injected in eyelids",
#> "Response": "death",
#> "Reference": "Hazlett, Rosen et al. 1978",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Pseudomonas_aeruginosa_(bacterimia):_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 15,
#> "PathogenName": "Rickettsia rickettsi",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.777,
#> "N50": 21.3,
#> "Host type": "Pooled data",
#> "Dose units": "CFU",
#> "Response": "morbidity",
#> "Reference": "Saslaw and Carlisle 1966 and Dupont, Hornick et al. 1973",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Rickettsia_rickettsi:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 16,
#> "PathogenName": "Salmonella Typhi",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.175,
#> "N50": 1110000,
#> "Host type": "human",
#> "Dose units": "CFU",
#> "Route": "oral, in milk",
#> "Response": "disease",
#> "Reference": "Hornick et al. (1966),Hornick et al. (1970)",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_Typhi:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 17,
#> "PathogenName": "Salmonella anatum",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.318,
#> "N50": 37100,
#> "Host type": "human",
#> "Dose units": "CFU",
#> "Route": "oral, with eggnog",
#> "Response": "positive stool culture",
#> "Reference": "McCullough and Elsele,1951",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_anatum:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 18,
#> "PathogenName": "Salmonella meleagridis",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.389,
#> "N50": 16800,
#> "Host type": "human",
#> "Dose units": "CFU",
#> "Route": "oral, with eggnog",
#> "Response": "infection",
#> "Reference": "McCullough and Eisele 1951,2",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_meleagridis:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 19,
#> "PathogenName": "Salmonella nontyphoid",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.21,
#> "N50": 49.8,
#> "Host type": "mice",
#> "Dose units": "CFU",
#> "Route": "intraperitoneal",
#> "Response": "death",
#> "Reference": "Meynell and Meynell,1958",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_nontyphoid:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 20,
#> "PathogenName": "Salmonella serotype newport",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "exponential",
#> "k": 3.97e-06,
#> "Host type": "human",
#> "Dose units": "CFU",
#> "Route": "oral",
#> "Response": "infection",
#> "Reference": "McCullough and Elsele,1951",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Salmonella_serotype_newport:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 21,
#> "PathogenName": "Shigella",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.265,
#> "N50": 1480,
#> "Host type": "human",
#> "Dose units": "CFU",
#> "Route": "oral (in milk)",
#> "Response": "positive stool isolation",
#> "Reference": "DuPont et al. (1972b)",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Shigella:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 22,
#> "PathogenName": "Staphylococcus aureus",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "exponential",
#> "k": 7.64e-08,
#> "Host type": "human",
#> "Dose units": "CFU/cm2",
#> "Route": "subcutaneous",
#> "Response": "infection",
#> "Reference": "Rose and Haas 1999",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Staphylococcus_aureus:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 23,
#> "PathogenName": "Vibrio cholerae",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.25,
#> "N50": 243,
#> "Host type": "human",
#> "Dose units": "CFU",
#> "Route": "oral (with NaHCO3)",
#> "Response": "infection",
#> "Reference": "Hornick et al., (1971)",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Vibrio_cholerae:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 24,
#> "PathogenName": "Yersinia pestis",
#> "PathogenGroup": "Bacteria",
#> "Best fit model*": "exponential",
#> "k": 0.0016,
#> "Host type": "mice",
#> "Dose units": "CFU",
#> "Route": "intranasal",
#> "Response": "death",
#> "Reference": "Lathem et al. 2005",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Yersinia_pestis:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 25,
#> "PathogenName": "Adenovirus",
#> "PathogenGroup": "Viruses",
#> "Best fit model*": "exponential",
#> "k": 0.607,
#> "Host type": "human",
#> "Dose units": "TCID50",
#> "Route": "inhalation",
#> "Response": "infection",
#> "Reference": "Couch, Cate et al. 1966",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Adenovirus:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 26,
#> "PathogenName": "Echovirus",
#> "PathogenGroup": "Viruses",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 1.06,
#> "N50": 922,
#> "Host type": "human",
#> "Dose units": "PFU",
#> "Route": "oral",
#> "Response": "infection",
#> "Reference": "Schiff et al.,1984",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Echovirus:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 27,
#> "PathogenName": "Enteroviruses",
#> "PathogenGroup": "Viruses",
#> "Best fit model*": "exponential",
#> "k": 0.0037,
#> "Host type": "pig",
#> "Dose units": "PFU",
#> "Route": "oral",
#> "Response": "infection",
#> "Reference": "Cliver, 1981",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Enteroviruses:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 28,
#> "PathogenName": "Influenza",
#> "PathogenGroup": "Viruses",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.581,
#> "N50": 945000,
#> "Host type": "human",
#> "Dose units": "TCID50",
#> "Route": "intranasal",
#> "Response": "infection",
#> "Reference": "Murphy et al., 1984 & Murphy et al., 1985",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Influenza:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 29,
#> "PathogenName": "Lassa virus",
#> "PathogenGroup": "Viruses",
#> "Best fit model*": "exponential",
#> "k": 2.95,
#> "Host type": "guinea pig",
#> "Dose units": "PFU",
#> "Route": "subcutaneous",
#> "Response": "death",
#> "Reference": "Jahrling et al., 1982",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Lassa_virus:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 30,
#> "PathogenName": "Poliovirus",
#> "PathogenGroup": "Viruses",
#> "Best fit model*": "exponential",
#> "k": 0.491,
#> "Host type": "human",
#> "Dose units": "PD50 (mouse paralytic doses)",
#> "Route": "oral (capsule)",
#> "Response": "alimentary infection",
#> "Reference": "Koprowski",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Poliovirus:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 31,
#> "PathogenName": "Rhinovirus",
#> "PathogenGroup": "Viruses",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.221,
#> "N50": 1.81,
#> "Host type": "human",
#> "Dose units": "TCID50 doses",
#> "Route": "intranasal",
#> "Response": "infection",
#> "Reference": "Hendley et al., 1972",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Rhinovirus:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 32,
#> "PathogenName": "Rotavirus",
#> "PathogenGroup": "Viruses",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.253,
#> "N50": 6.17,
#> "Host type": "human",
#> "Dose units": "FFU",
#> "Route": "oral",
#> "Response": "infection",
#> "Reference": "Ward et al, 1986",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Rotavirus:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 33,
#> "PathogenName": "SARS",
#> "PathogenGroup": "Viruses",
#> "Best fit model*": "exponential",
#> "k": 0.0025,
#> "Host type": "mice hACE-2 and A/J",
#> "Dose units": "PFU",
#> "Route": "intranasal",
#> "Response": "death",
#> "Reference": "DeDiego et al., 2008 & De Albuquerque et al., 2006",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/SARS:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 34,
#> "PathogenName": "Cryptosporidium parvum and Cryptosporidium hominis",
#> "PathogenGroup": "Protozoa",
#> "Best fit model*": "exponential",
#> "k": 0.0572,
#> "Host type": "human",
#> "Dose units": "oocysts",
#> "Route": "oral",
#> "Response": "infection",
#> "Reference": "Messner et al. 2001",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Cryptosporidium_parvum_and_Cryptosporidium_hominis:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 35,
#> "PathogenName": "Endamoeba coli",
#> "PathogenGroup": "Protozoa",
#> "Best fit model*": "beta-Poisson",
#> "alpha": 0.101,
#> "N50": 341,
#> "Host type": "human",
#> "Dose units": "Cysts",
#> "Route": "oral",
#> "Response": "infection",
#> "Reference": "Rendtorff 1954",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Endamoeba_coli:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 36,
#> "PathogenName": "Giardia duodenalis",
#> "PathogenGroup": "Protozoa",
#> "Best fit model*": "exponential",
#> "k": 0.0199,
#> "Host type": "human",
#> "Dose units": "Cysts",
#> "Route": "oral",
#> "Response": "infection",
#> "Reference": "Rendtorff 1954",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Giardia_duodenalis:_Dose_Response_Models"
#> },
#> {
#> "PathogenID": 37,
#> "PathogenName": "Naegleria fowleri",
#> "PathogenGroup": "Protozoa",
#> "Best fit model*": "exponential",
#> "k": 3.42e-07,
#> "Host type": "mice",
#> "Dose units": "no of trophozoites",
#> "Route": "intravenous",
#> "Response": "death",
#> "Reference": "Adams et al. 1976 & Haggerty and John 1978",
#> "Link": "http://qmrawiki.canr.msu.edu/index.php/Naegleria_fowleri:_Dose_Response_Models"
#> }
#> ],
#> "health": [
#> {
#> "PathogenID": 1,
#> "PathogenName": "Bacillus anthracis"
#> },
#> {
#> "PathogenID": 2,
#> "PathogenName": "Burkholderia pseudomallei"
#> },
#> {
#> "PathogenID": 3,
#> "PathogenName": "Campylobacter jejuni and Campylobacter coli",
#> "infection_to_illness": 0.7,
#> "dalys_per_case": 0.0046
#> },
#> {
#> "PathogenID": 4,
#> "PathogenName": "Coxiella burnetii"
#> },
#> {
#> "PathogenID": 5,
#> "PathogenName": "Escherichia coli enterohemorrhagic (EHEC)"
#> },
#> {
#> "PathogenID": 6,
#> "PathogenName": "Escherichia coli"
#> },
#> {
#> "PathogenID": 7,
#> "PathogenName": "Francisella tularensis"
#> },
#> {
#> "PathogenID": 8,
#> "PathogenName": "Legionella pneumophila"
#> },
#> {
#> "PathogenID": 9,
#> "PathogenName": "Listeria monocytogenes (Death as response)"
#> },
#> {
#> "PathogenID": 10,
#> "PathogenName": "Listeria monocytogenes (Infection)"
#> },
#> {
#> "PathogenID": 11,
#> "PathogenName": "Listeria monocytogenes (Stillbirths)"
#> },
#> {
#> "PathogenID": 12,
#> "PathogenName": "Mycobacterium avium"
#> },
#> {
#> "PathogenID": 13,
#> "PathogenName": "Pseudomonas aeruginosa (Contact lens)"
#> },
#> {
#> "PathogenID": 14,
#> "PathogenName": "Pseudomonas aeruginosa (bacterimia)"
#> },
#> {
#> "PathogenID": 15,
#> "PathogenName": "Rickettsia rickettsi"
#> },
#> {
#> "PathogenID": 16,
#> "PathogenName": "Salmonella Typhi"
#> },
#> {
#> "PathogenID": 17,
#> "PathogenName": "Salmonella anatum"
#> },
#> {
#> "PathogenID": 18,
#> "PathogenName": "Salmonella meleagridis"
#> },
#> {
#> "PathogenID": 19,
#> "PathogenName": "Salmonella nontyphoid"
#> },
#> {
#> "PathogenID": 20,
#> "PathogenName": "Salmonella serotype newport"
#> },
#> {
#> "PathogenID": 21,
#> "PathogenName": "Shigella"
#> },
#> {
#> "PathogenID": 22,
#> "PathogenName": "Staphylococcus aureus"
#> },
#> {
#> "PathogenID": 23,
#> "PathogenName": "Vibrio cholerae"
#> },
#> {
#> "PathogenID": 24,
#> "PathogenName": "Yersinia pestis"
#> },
#> {
#> "PathogenID": 25,
#> "PathogenName": "Adenovirus"
#> },
#> {
#> "PathogenID": 26,
#> "PathogenName": "Echovirus"
#> },
#> {
#> "PathogenID": 27,
#> "PathogenName": "Enteroviruses"
#> },
#> {
#> "PathogenID": 28,
#> "PathogenName": "Influenza"
#> },
#> {
#> "PathogenID": 29,
#> "PathogenName": "Lassa virus"
#> },
#> {
#> "PathogenID": 30,
#> "PathogenName": "Poliovirus"
#> },
#> {
#> "PathogenID": 31,
#> "PathogenName": "Rhinovirus"
#> },
#> {
#> "PathogenID": 32,
#> "PathogenName": "Rotavirus",
#> "infection_to_illness": 0.03,
#> "dalys_per_case": 0.014
#> },
#> {
#> "PathogenID": 33,
#> "PathogenName": "SARS"
#> },
#> {
#> "PathogenID": 34,
#> "PathogenName": "Cryptosporidium parvum and Cryptosporidium hominis"
#> },
#> {
#> "PathogenID": 35,
#> "PathogenName": "Endamoeba coli"
#> },
#> {
#> "PathogenID": 36,
#> "PathogenName": "Giardia duodenalis",
#> "infection_to_illness": 0.3,
#> "dalys_per_case": 0.0015
#> },
#> {
#> "PathogenID": 37,
#> "PathogenName": "Naegleria fowleri"
#> }
#> ]
#> }