Function reference • kwbGompitz

All functions

addAssignment(): Append assignment "a=b"

catHeader(): Print an underlined Header

catStructure(): Print the Structure of an Object

cbindDataFrames(): Bind Columns from a list of Data Frames

checkConvergence(): Warn if Model did not converge for all Strata

checkInputData(): Check Input Data

columnwise(): Apply a Function for each Column

compareEstimates(): Compare Estimates in calib.txt and param.txt

composeGompitzInputData(): Compose Input Data for Gompitz Functions

composeMasterData(): Prepare "Master Data" for Gompitz Functions

copyParameters(): Copy Model Parameters from one Stratum to another

createExampleFiles(): Create Example Files

createExampleFilesSmall(): Create smaller versions of the example files

createStatusMatrix(): Default Covariate Status Matrix

default_condition_colours(): Get default Vector of Condition Colours

demo_survival(): Interactive Plot of Survival Curves

.calibrationAvailable(): Check for Convergence in Calibration

.fileContentStrategy0(): Content for Strategy File 0

.fileContentStrategy1(): Content for Strategy File 1

.fileContentStrategy1or2(): File Content for Strategy 1 or 2

.fileContentStrategy2(): Content for Strategy File 2

.fileContentStrategy3(): Content for Strategy File 3

.getObservationByCondition(): Number of observations

.orderByWeightedProbabilities(): probability order 2

.runModuleInDirectory(): .runModuleInDirectory

exampleCalibration(): Calibration Object of the Gompitz Example

exampleFile(): Get Path to Example File

getCalibration(): Get a full Calibration Object from File

getCalibrationFile(): Source File of Calibration Result

getCalibrationParameters(): Get parameters from Calibration Object

getConstants(): Gompitz Covariate Status Constants

getDefaultPaths(): Default Paths to GompitZ Files

getExampleStatusMatrix(): Example Covariate Status Matrix

getFileContentForInputFile(): Get file Content for Input File

getSampleObservations(): Random Observation Data

getStataLabels(): Read Strata Labels from Observation File

get_label(): Provide Label for Plot in selected Language

get_or_create_target_dir(): Create target directory if required and return the path to it

get_survivals(): Get Survival Curves from a Calibration Object

gg_stacked_bars(): Generate gg-plot of stacked Bars

inputFileBody(): Calibration Input File Body

inputFileHeader(): Calibration Input File Header

interpolate_between(): Interpolate equidistantly between End Points

marginal_survival(): Condition state marginal survival function surv(j,t,theta,Z)

matrixToLongDataFrame(): Convert Data in wide View to long View

multicall(): Call a Function with all Combinations of Argument Ranges

multiplot_survival(): Plot several Survival Curves

parameterLines(): Generate text lines for param.txt

parameterplot(): Plot multiple Survival Curves

plotCalibration1(): Plot Calibration Result

plotCalibration2(): Plot Calibration Result (2)

plotPrediction(): Plot the Result of a Prediction

plotPredictionByYear(): Plot Prediction by Year to temp. PDF File

plotPredictionForYear(): Plot Prediction for the given Year

plot_pipe_conditions(): Plot the Pipe Conditions over Time

plot_prediction_by_pipe(): Plot Condition Probabilities by Pipe

plot_stacked_bars(): Generate gg-plot of Stacked Bars

plot_survival_curves(): Plot Survival Curves

prepare_for_gg_stacked_bars(): Prepare data for plot_stacked_bars()

print(<gompitz.calibration>): Print a GompitZ Calibration Structure

print(<gompitz_stratum_calib>): Print the Calibration for one Stratum

printConvergence(): Print the Convergence Information

readCalibration(): Read Calibration Result

readObservations(): Read Observation Data from File in GompitZ-Format

readParameters(): Read Parameters from "param.txt"

readPredictionFile(): Read Prediction Result File

runGompcalExample(): Run Calibration Example

runGompcalInDirectory(): Run gompcal.exe in given Directory

runGompitzCalibration(): Perform GompitZ Calibration

runGompitzPrediction(): Run Gompitz Predicion

runGompredInDirectory(): Run gompred.exe in given Directory

spanIf(): Span a Vector around x if Condition is met

SQRT_2_PI: Mathematical Constant sqrt(2 * pi)

standard_survival(): Weibull condition state survival function

strategyFileContent(): Content for Strategy File

summary_generic_sim(): Aggregate simulated Condition Classes

survivals(): Get Values of (Standard or Marginal) Survival Curves

survivals_original(): Get Values of (Standard or Marginal) Survival Curves

tempGompitzDir(): Create temporary gompitz directory

test_marginal_survival(): Test Marginal Survival

toStatusMatrix(): Convert Text Lines to Status Matrix

to_theme_legend(): Generate ggplot Theme for Legend

underline(): Create a String to be used as an Underline

writeInputFile(): Write the Input File

writeParameters(): Write Calibration Parameters to File