Workflow 1: Import, Clean, Check and Export

Functions for Standard Data Processing Workflow, for importing cleaning checking and exporting Endnote data

create_endnote_list()

Create List From Endnote XML

create_references_df()

Create References Dataframe

clean_references_df()

Clean References Dataframe

create_list_by_pubtype_from_df()

Create List By Pub Type From Datafram

create_list_with_unique_entries()

Create List with Unique Entries

check_for_differences()

Check two Dataframes for Differences

check_problematic_entries()

Check Endnote for Problematic References

write_references_df_to_xlsx()

Write References Dataframe to XLSX

write_clean_references_df_to_xlsx()

Write Clean References Dataframe to XLSX

Workflow 2: Import and Prepare Data for Plotting

Functions for Alternative Data Processing Workflow. Currently this workflow is used for preparing the data for the plotting functions

create_df_from_endnote_xml()

Create dataframe from Endnote XML file

create_keywords_df()

Create Keywords Dataframe

Plot

Functions for Plotting

plot_pubs_by_author()

Plot Number of Publications by Author

plot_pubs_by_year()

Plot Publications By Year

plot_wordcloud_keywords()

Plot Wordcloud Keywords

Helper Functions

Helper Functions for Preparing the Data

add_file_info_attributes()

Helper function: add fileinfo attributes

clean_accessibility()

Helper function: clean access information

clean_author_names()

Helper function: clean author names

clean_dois()

Helper function: clean DOIs

clean_project_names()

Helper function: clean project names

default_clean_xlsx()

Helper function: default filename for cleaned XLSX

default_xlsx()

Helper function: default filename for XLSX

default_xml()

Path to Default XML File

get_abstract()

Helper function: get abstract from list for a reference

get_authors()

Helper function: get authors from list for a reference

get_available_multi_cols()

Helper Function: Get Available Multi Col Names

get_keywords()

Helper function: get keywords from list for a reference

get_pdfurls()

Helper function: get pdfurls from list for a reference

get_reference_type_names()

Helper function: get reference type names

get_secondary_authors()

Helper function: get secondary authors from list for a reference

get_tertiary_authors()

Helper function: get tertiary authors from list for a reference

get_xml_filename_without_extension()

Helper function: get xml filename without extension

give_hints_accessiblity()

Helper Function: Give Hints For Accessibility

give_hints_author_names()

Helper Function: Give Hints For Author Names

give_hints_project_names()

Helper Function: Give Hints For Project Names

record_list_to_df()

Reference List to Data Frame

tidy_df()

Helper function: tidy dataframe

tidy_multi_cols_df()

Helper Function: Tidy Multi Cols Dataframe

tidy_multi_cols_list()

Helper Function: Tidy Multi Cols List

tidy_selected_cols()

Helper Function: Tidy Selected Cols

`%>%`

Pipe operator