Here’s some general information about sema.uncert.
| Field | Values |
|---|---|
| Package | sema.uncert |
| Title | Functions for Uncertainty Analysis in Sema-Berlin-2 |
| Version | 0.1.0.9000 |
| Authors@R | c(person(given = "Hauke", family = "Sonnenberg", role = c("aut", "cre"), email = "hauke.sonnenberg@kompetenz-wasser.de", comment = c(ORCID = "0000-0001-9134-2871")), person(given = "Kompetenzzentrum Wasser Berlin gGmbH (KWB)", role = "cph")) |
| Description | This package provides the functions used for the uncertainty analysis in KWB-project sema-berlin-2. |
| License | MIT + file LICENSE |
| URL | https://github.com/KWB-R/sema.uncert |
| BugReports | https://github.com/KWB-R/sema.uncert/issues |
| Encoding | UTF-8 |
| LazyData | true |
| Suggests | covr, knitr, rmarkdown, testthat (>= 2.1.0) |
| RoxygenNote | 7.1.0 |
| Imports | doParallel, dplyr, foreach, ggplot2, kwb.plot, kwb.readxl, kwb.utils (>= 0.6.0.9000), magrittr, methods, parallel, rlang, sema.berlin, sema.berlin.app, tidyr, yaml |
| Remotes | github::kwb-r/kwb.plot, github::kwb-r/kwb.readxl, github::kwb-r/kwb.utils@dev, github::kwb-r/sema.berlin@dev, github::kwb-r/sema.berlin.app |
| VignetteBuilder | knitr |
| RemoteType | github |
| RemoteHost | api.github.com |
| RemoteRepo | sema.uncert |
| RemoteUsername | KWB-R |
| RemoteRef | HEAD |
| RemoteSha | 46c36e30f831effc76997b2aacba98a85236f2fc |
| GithubRepo | sema.uncert |
| GithubUsername | KWB-R |
| GithubRef | HEAD |
| GithubSHA1 | 46c36e30f831effc76997b2aacba98a85236f2fc |
| NeedsCompilation | no |
| Packaged | 2021-05-28 11:41:25 UTC; mrustl |
| Author | Hauke Sonnenberg [aut, cre] (<https://orcid.org/0000-0001-9134-2871>), Kompetenzzentrum Wasser Berlin gGmbH (KWB) [cph] |
| Maintainer | Hauke Sonnenberg <hauke.sonnenberg@kompetenz-wasser.de> |
| Built | R 4.0.4; ; 2021-05-28 11:41:26 UTC; windows |
This section analyzes the recursive package dependencies of sema.uncert.
Nodes are packages. Edges point in the direction of dependence.
| node | outDegree | inDegree | numRecursiveDeps | numRecursiveRevDeps | betweenness | pageRank |
|---|
node | outDegree | inDegree | numRecursiveDeps | numRecursiveRevDeps | betweenness | pageRank |
|---|---|---|---|---|---|---|
| Formula | 1 | 1 | 4 | 3 | 0.091 | 0.004 |
| Hmisc | 18 | 1 | 68 | 2 | 45.367 | 0.004 |
| MASS | 5 | 1 | 5 | 13 | 2.726 | 0.005 |
| Matrix | 6 | 2 | 7 | 15 | 8.500 | 0.005 |
| R6 | 0 | 8 | 0 | 24 | 0.000 | 0.009 |
| RColorBrewer | 0 | 3 | 0 | 15 | 0.000 | 0.005 |
| Rcpp | 2 | 5 | 5 | 12 | 10.667 | 0.010 |
| askpass | 1 | 1 | 1 | 5 | 5.000 | 0.008 |
| backports | 0 | 1 | 0 | 5 | 0.000 | 0.006 |
| base64enc | 0 | 3 | 0 | 14 | 0.000 | 0.006 |
| bslib | 7 | 1 | 16 | 4 | 16.500 | 0.004 |
| cachem | 2 | 1 | 3 | 4 | 0.000 | 0.004 |
| cellranger | 2 | 2 | 19 | 3 | 8.000 | 0.005 |
| checkmate | 2 | 1 | 2 | 4 | 4.333 | 0.004 |
| cli | 2 | 1 | 6 | 19 | 0.333 | 0.004 |
| cluster | 4 | 1 | 4 | 3 | 0.516 | 0.004 |
| codetools | 0 | 1 | 0 | 3 | 0.000 | 0.005 |
| colorspace | 4 | 1 | 5 | 15 | 2.833 | 0.006 |
| commonmark | 0 | 1 | 0 | 4 | 0.000 | 0.004 |
| compiler | 0 | 1 | 0 | 3 | 0.000 | 0.006 |
| cowplot | 7 | 1 | 38 | 2 | 0.900 | 0.004 |
| crayon | 3 | 3 | 5 | 21 | 9.567 | 0.005 |
| crosstalk | 4 | 1 | 12 | 3 | 0.200 | 0.004 |
| curl | 0 | 1 | 0 | 4 | 0.000 | 0.004 |
| data.table | 1 | 2 | 5 | 4 | 0.250 | 0.004 |
| digest | 1 | 4 | 1 | 23 | 0.417 | 0.007 |
| doParallel | 4 | 1 | 7 | 1 | 0.667 | 0.004 |
| dplyr | 13 | 5 | 22 | 5 | 37.908 | 0.005 |
| ellipsis | 1 | 7 | 2 | 23 | 0.000 | 0.009 |
| evaluate | 1 | 1 | 5 | 5 | 0.000 | 0.004 |
| fansi | 0 | 2 | 0 | 19 | 0.000 | 0.005 |
| farver | 0 | 1 | 0 | 14 | 0.000 | 0.004 |
| fastmap | 0 | 2 | 0 | 5 | 0.000 | 0.006 |
| foreach | 3 | 2 | 3 | 2 | 2.667 | 0.005 |
| foreign | 3 | 1 | 5 | 3 | 0.191 | 0.004 |
| fs | 1 | 1 | 5 | 6 | 3.000 | 0.005 |
| generics | 1 | 1 | 5 | 6 | 0.000 | 0.004 |
| ggplot2 | 13 | 9 | 37 | 12 | 288.354 | 0.011 |
| glue | 1 | 9 | 5 | 29 | 19.450 | 0.014 |
| grDevices | 0 | 18 | 0 | 77 | 0.000 | 0.069 |
| graphics | 1 | 14 | 1 | 71 | 2.917 | 0.034 |
| grid | 2 | 9 | 2 | 22 | 4.058 | 0.016 |
| gridExtra | 5 | 4 | 5 | 8 | 14.952 | 0.007 |
| gtable | 1 | 4 | 3 | 14 | 0.000 | 0.006 |
| highr | 1 | 1 | 6 | 5 | 0.000 | 0.004 |
| htmlTable | 8 | 1 | 26 | 3 | 34.000 | 0.004 |
| htmltools | 5 | 11 | 5 | 13 | 33.133 | 0.013 |
| htmlwidgets | 4 | 3 | 11 | 6 | 10.833 | 0.005 |
| httpuv | 5 | 1 | 11 | 4 | 0.500 | 0.004 |
| httr | 5 | 1 | 13 | 3 | 13.200 | 0.004 |
This section analyzes the dependency relationships between functions within sema.uncert.
Nodes are functions. Edges point in the direction of dependence.
| node | type | isExported | coveredLines | totalLines | coverageRatio | meanCoveragePerLine | filename | betweenness | outDegree | inDegree | numRecursiveDeps | numRecursiveRevDeps | pageRank |
|---|
node | type | isExported | coveredLines | totalLines | coverageRatio | meanCoveragePerLine | filename | betweenness | outDegree | inDegree | numRecursiveDeps | numRecursiveRevDeps | pageRank |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| MonteCarloRun$public_methods$clone | R6 method | true | 0.000 | 0 | 0 | 0 | 0 | 0.004 | |||||
| MonteCarloRun$public_methods$get_plot_dir | R6 method | true | 0.000 | 1 | 0 | 1 | 0 | 0.004 | |||||
| MonteCarloRun$public_methods$get_result_file_df | R6 method | true | 0.000 | 1 | 0 | 6 | 0 | 0.004 | |||||
| MonteCarloRun$public_methods$get_result_file_matrices | R6 method | true | 6.000 | 1 | 1 | 6 | 1 | 0.007 | |||||
| MonteCarloRun$public_methods$get_run_dir | R6 method | true | 5.000 | 1 | 1 | 5 | 1 | 0.005 | |||||
| MonteCarloRun$public_methods$get_run_number | R6 method | true | 0.000 | 0 | 0 | 0 | 0 | 0.004 | |||||
| MonteCarloRun$public_methods$initialize | R6 method | true | 0.000 | 0 | 0 | 0 | 0 | 0.004 | |||||
| MonteCarloRun$public_methods$load_result | R6 method | true | 0.000 | 1 | 0 | 7 | 0 | 0.004 | |||||
| MonteCarloRun$public_methods$load_result_df | R6 method | true | 0.000 | 1 | 0 | 8 | 0 | 0.004 | |||||
| MonteCarloRun$public_methods$read_metadata | R6 method | true | 0.000 | 1 | 0 | 4 | 0 | 0.004 | |||||
| MonteCarloRun$public_methods$read_model_run_metadata | R6 method | true | 0.000 | 1 | 0 | 8 | 0 | 0.004 | |||||
| MonteCarloRun$public_methods$read_model_run_results | R6 method | true | 0.000 | 2 | 0 | 9 | 0 | 0.004 | |||||
| MonteCarloRun$public_methods$read_model_run_results_bin | R6 method | true | 0.000 | 1 | 0 | 7 | 0 | 0.004 | |||||
| add_metadata | function | false | 3 | 3 | 1.000 | 4.000 | R/utils.R | 4.000 | 1 | 7 | 1 | 9 | 0.016 |
| add_survival_column | function | false | 0 | 9 | 0.000 | 0.000 | R/add_survival_column.R | 0.000 | 0 | 0 | 0 | 0 | 0.004 |
| all_elements_of_class | function | true | 0 | 2 | 0.000 | 0.000 | R/utils.R | 0.000 | 0 | 2 | 0 | 12 | 0.016 |
| append_unless_last | function | false | 0 | 1 | 0.000 | 0.000 | R/utils.R | 0.000 | 0 | 1 | 0 | 2 | 0.007 |
| apply_network_modification | function | false | 0 | 9 | 0.000 | 0.000 | R/apply_network_modification.R | 18.000 | 3 | 1 | 11 | 2 | 0.005 |
| calculate_and_save_indicators | function | false | 0 | 4 | 0.000 | 0.000 | R/calculate_and_save_indicators.R | 13.000 | 3 | 1 | 16 | 1 | 0.004 |
| calculate_clean_indicators_from_matrices | function | false | 0 | 3 | 0.000 | 0.000 | R/calculate_clean_indicators_from_matrices.R | 15.000 | 5 | 1 | 9 | 2 | 0.005 |
| calculate_indicator | function | false | 0 | 1 | 0.000 | 0.000 | R/calculate_indicator.R | 0.000 | 2 | 0 | 2 | 0 | 0.004 |
| calculate_indicators | function | false | 0 | 6 | 0.000 | 0.000 | R/calculate_clean_indicators_from_matrices.R | 5.000 | 1 | 1 | 2 | 3 | 0.005 |
| calculate_range_statistics | function | false | 0 | 7 | 0.000 | 0.000 | R/get_all_ribbon_stats_new.R | 0.000 | 0 | 1 | 0 | 2 | 0.006 |
| calculate_shares_per_stratum_and_age | function | false | 0 | 3 | 0.000 | 0.000 | R/calculate_shares_per_stratum_and_age.R | 0.000 | 0 | 0 | 0 | 0 | 0.004 |
| change_configs_to_data_frame | function | false | 0 | 1 | 0.000 | 0.000 | R/change_configs_to_data_frame.R | 6.000 | 1 | 2 | 2 | 3 | 0.011 |
| clean_indicators | function | false | 0 | 1 | 0.000 | 0.000 | R/calculate_clean_indicators_from_matrices.R | 0.000 | 0 | 1 | 0 | 3 | 0.005 |
| clear_strategy | function | false | 0 | 3 | 0.000 | 0.000 | R/helpers.R | 0.000 | 0 | 0 | 0 | 0 | 0.004 |
| condition_evolution_to_length_in_condition | function | false | 0 | 3 | 0.000 | 0.000 | R/run_model.R | 0.000 | 0 | 1 | 0 | 2 | 0.005 |
| condition_year_matrix_to_data_frame | function | false | 0 | 4 | 0.000 | 0.000 | R/merge_results.R | 4.000 | 1 | 1 | 1 | 4 | 0.009 |
| configure_network_modification_material | function | false | 0 | 1 | 0.000 | 0.000 | R/provide_network_configs.R | 0.000 | 0 | 0 | 0 | 0 | 0.004 |
| configure_network_modification_size | function | false | 0 | 3 | 0.000 | 0.000 | R/provide_network_configs.R | 0.000 | 0 | 0 | 0 | 0 | 0.004 |
| configure_network_modification_year | function | false | 0 | 1 | 0.000 | 0.000 | R/provide_network_configs.R | 0.000 | 0 | 0 | 0 | 0 | 0.004 |
| create_and_save_plots | function | false | 0 | 13 | 0.000 | 0.000 | R/evaluate_monte_carlo_run.R | 12.000 | 7 | 1 | 12 | 1 | 0.004 |
| create_monte_carlo_result | function | false | 0 | 9 | 0.000 | 0.000 | R/create_monte_carlo_result.R | 0.000 | 3 | 0 | 10 | 0 | 0.004 |
| create_new_numbered_folder | function | true | 0 | 6 | 0.000 | 0.000 | R/utils.R | 4.500 | 2 | 1 | 3 | 2 | 0.004 |
| create_numbered_filenames | function | false | 0 | 2 | 0.000 | 0.000 | R/utils.R | 3.500 | 1 | 2 | 1 | 4 | 0.008 |
| create_run_dummy_files | function | false | 0 | 3 | 0.000 | 0.000 | R/init_new_monte_carlo_run.R | 1.500 | 1 | 1 | 2 | 2 | 0.004 |
| create_save_function | function | false | 0 | 11 | 0.000 | 0.000 | R/create_save_function.R | 7.000 | 4 | 1 | 7 | 1 | 0.004 |
| create_scatter_plots_by_size | function | false | 0 | 5 | 0.000 | 0.000 | R/create_scatter_plots_by_size.R | 0.000 | 1 | 0 | 1 | 0 | 0.004 |
| create_uncertainty_plots | function | false | 0 | 12 | 0.000 | 0.000 | R/create_uncertainty_plots.R | 4.000 | 2 | 1 | 2 | 2 | 0.004 |
| cumpaste | function | false | 0 | 1 | 0.000 | 0.000 | R/utils.R | 0.000 | 0 | 2 | 0 | 9 | 0.013 |
| data_frame_for_yaml | function | true | 0 | 2 | 0.000 | 0.000 | R/utils.R | 0.000 | 0 | 1 | 0 | 5 | 0.005 |
| default_data_store | function | false | 0 | 1 | 0.000 | 0.000 | R/helpers.R | 0.000 | 1 | 0 | 2 | 0 | 0.004 |
| evaluate_monte_carlo_run_subnet_50000 | function | false | 0 | 8 | 0.000 | 0.000 | R/evaluate_monte_carlo_run.R | 0.000 | 5 | 0 | 41 | 0 | 0.004 |
| fetch_do_nothing_results | function | false | 0 | 2 | 0.000 | 0.000 | R/helpers.R | 0.000 | 0 | 1 | 0 | 4 | 0.005 |
| filter_model_runs | function | false | 0 | 2 | 0.000 | 0.000 | R/get_all_ribbon_stats_new.R | 0.000 | 0 | 1 | 0 | 4 | 0.005 |
| find_construction_year_range_by_material | function | false | 0 | 3 | 0.000 | 0.000 | R/modify_network_material.R | 0.000 | 0 | 0 | 0 | 0 | 0.004 |
| finish_plot | function | false | 0 | 2 | 0.000 | 0.000 | R/finish_plot.R | 0.000 | 0 | 2 | 0 | 3 | 0.007 |
| flat_list_to_suffix | function | false | 0 | 2 | 0.000 | 0.000 | R/utils.R | 0.000 | 2 | 0 | 2 | 0 | 0.004 |
| flatten_repair_config | function | false | 0 | 5 | 0.000 | 0.000 | R/change_configs_to_data_frame.R | 0.000 | 0 | 1 | 0 | 5 | 0.015 |
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